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The 2019 Galaxy Community Conference (GCC2019) will be held in Freiburg, Germany, 1-8 July.  There will be one day of training, three days of mixed meeting and training, and then two to four days of CollaborationFest.  The meeting features joint & parallel sessions; invited, accepted, and lightning talks; poster and demo sessions; birds-of-a-feather meetups; social events; and training sessions every day.

Registration and Abstract Submission are now open.

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Monday, July 1
 

09:00

Conference Desk Open Konzerthaus Lobby

10:00

Introduction to Galaxy Administration I Konzerthaus Room B Introduction to Using Galaxy (Galaxy 101) Konzerthaus Room AMohammad Heydarian

12:00

Lunch KonzertHaus, TBA

13:00

Beyond the Intro: Further Adventures in Using Galaxy Konzerthaus Room AMohammad Heydarian Introduction to Galaxy Administration II Konzerthaus Room B

15:00

Break Konzerthaus Lobby

15:30

Introduction to Galaxy Administration III Konzerthaus Room B Quality control of HTS data Konzerthaus Room A
 
Tuesday, July 2
 

08:00

Conference Desk Open Konzerthaus Lobby

09:00

Session 1: Epigenetics Track Konzerthaus Room D Session 1: Proteomics & Metabolomics Track Konzerthaus Room C

10:30

Break / Sponsors Konzerthaus Lobby

11:00

Session 2: Epigenetics Track Konzerthaus Room D Session 2: Proteomics & Metabolomics Track Konzerthaus Room C

12:00

Lunch KonzertHaus, TBA

12:20

Birds-of-a-Feather (BoFs), with Lunch TBD

13:30

Analyzing Large / Complex Experimental Designs with Galaxy Konzerthaus Room GDaniel Blankenberg • Marius van den Beek • Mohammad Heydarian ChIP-seq data analysis Konzerthaus Room ELeily Rabbani • Devon Ryan EWAS data analysis for population epigenetics integrated into Galaxy - Epigenetics Konzerthaus Room F How to create a Galaxy Tool Konzerthaus Room HJohn Chilton • Nicola Soranzo Metabolomics data analysis I Konzerthaus Room AGildas Le Corguillé • Mélanie Petera Proteomic data analysis with Galaxy Konzerthaus Room BMatthias Fahrner • Maren Stillger • Melanie Föll Session 3: Training Konzerthaus

15:00

Poster, Demo, and Sponsor Session Konzerthaus

16:00

Hi-C analysis Konzerthaus Room ELeily Rabbani • Joachim Wolff Machine Learning with Galaxy Konzerthaus Room GJeremy Goecks • Anup Kumar MALDI imaging of peptides data analysis Konzerthaus Room BMatthias Fahrner • Maren Stillger • Melanie Föll Metabolomics data analysis II Konzerthaus Room AGildas Le Corguillé • Mélanie Petera Scripting Galaxy through BioBlend Konzerthaus Room HNicola Soranzo Session 5: Training Konzerthaus TBA Konzerthaus Room F

17:30

Session 6: Invited, accepted, and lightning talks Konzerthaus Room C
 
Wednesday, July 3
 

08:00

Conference Desk Open Konzerthaus Lobby

09:00

Session 7: Administration & Development Track Konzerthaus Room D Session 7: Metagenomics & Assembly Track Konzerthaus Room C

10:30

Break / Sponsors Konzerthaus Lobby

11:00

Session 8: Administration & Development Track Konzerthaus Room D Session 8: Metagenomics & Assembly Track Konzerthaus Room C

12:00

Lunch KonzertHaus, TBA

12:20

Birds-of-a-Feather (BoFs), with Lunch TBD

13:30

16S analysis with mothur Konzerthaus Room ASaskia Hiltemann Assembly, annotation and analysis of bacterial genomes Konzerthaus Room B Galaxy Interactive Environments Konzerthaus Room FHelena Rasche Machine Learning with Galaxy Konzerthaus Room H Session 9: Training Konzerthaus Using Galaxy for bridging WGS and Clinical Genetic Diagnostics Konzerthaus Room E Visualization of HTS Data in Galaxy Konzerthaus Room G

15:00

Poster, Demo, and Sponsor Session Konzerthaus

16:00

Beyond the Intro: Further Adventures in Using Galaxy Konzerthaus Room HMohammad Heydarian Genomic assembly and data analysis in Galaxy with Nanopore ONT long read sequencing Konzerthaus Room BSaskia Hiltemann • Milad Miladi Handling integrated biological data using Python, Jupyter, and InterMine Konzerthaus Room GYo Yehudi Metatranscriptomics and multi-omics functional microbiome analysis Konzerthaus Room APratik Jagtap Running Galaxy on Kubernetes Konzerthaus Room ESergey Golitsynskiy • Enis Afgan • Nuwan Goonasekera • Alex Mahmoud Session 11: Training Konzerthaus Visualisation development in Galaxy Konzerthaus Room FAysam Guerler • Jeremy Goecks

17:30

Session 12: Invited, accepted, and lightning talks Konzerthaus Room C

18:30

Conference Dinner Offsite
 
Thursday, July 4
 

08:00

Conference Desk Open Konzerthaus Lobby

09:00

Session 13: Diverse Communities Track Konzerthaus Room C Session 13: Transcriptomics & Genome Variation Track Konzerthaus Room D

10:30

Break / Sponsors Konzerthaus Lobby

11:00

Session 14: Diverse Communities Track Konzerthaus Room C Session 14: Transcriptomics & Genome Variation Track Konzerthaus Room D

12:00

Lunch KonzertHaus, TBA

12:20

Birds-of-a-Feather (BoFs), with Lunch TBD

13:30

Galaxy Code Architecture Konzerthaus Room GJohn Chilton • Nate Coraor Import, handle, visualize and analyze biodiversity data in Galaxy Konzerthaus Room A Session 15: Training Konzerthaus TBA Konzerthaus Room B The RNA workbench, best practices for RNA and high-throughput sequencing bioinformatics in Galaxy - RNA and transcriptomics Konzerthaus Room E Train the Galaxy Trainer Konzerthaus Room H Variant calling I - from sequenced reads to variant lists Konzerthaus Room FWolfgang Maier

15:00

Poster, Demo, and Sponsor Session Konzerthaus

16:00

Making your open source project awesome Konzerthaus Room HBérénice Batut • Yo Yehudi Populations genomics with RADseq Konzerthaus Room AYvan Le Bras Session 17: Training Konzerthaus Single cell RNA-seq analysis Konzerthaus Room EMehmet Tekman TBA Konzerthaus Room G TBA Konzerthaus Room B Variant Calling II - causative variant discovery Konzerthaus Room FWolfgang Maier

17:30

Session 18: Invited, accepted, and lightning talks Konzerthaus Room C
 
Friday, July 5
 

08:00

Conference Desk Open Konzerthaus Lobby

09:00

CollaborationFest: Core Konzerthaus Room A
 
Saturday, July 6
 

08:00

Conference Desk Open Konzerthaus Lobby

09:00

CollaborationFest: Core Konzerthaus Room A
 
Sunday, July 7
 

08:00

Conference Desk Open TBD

09:00

CollaborationFest: Encore TBD
 
Monday, July 8
 

08:00

Conference Desk Open TBD

09:00

CollaborationFest: Encore TBD