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GCC2019 has ended
The 2019 Galaxy Community Conference (GCC2019) was held in Freiburg, Germany, 1-8 July.  There was one day of training, three days of mixed meeting and training, and then two to four days of CollaborationFest.  The meeting featured joint & parallel sessions; invited, accepted, and lightning talks; poster and demo sessions; birds-of-a-feather meetups; social events; and training sessions every day.

Thanks to everyone who helped make GCC2019 a success!

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Monday, July 1
 

09:00 CEST

Beer Decoded, Here and Now! Italy Nanopore Loading Zone! Italy Conference Desk Open Konzerthaus

10:00 CEST

Introduction to Galaxy Administration I GreeceMartin Čech • Enis Afgan • Simon Gladman • Marius van den Beek • John Chilton • Nate Coraor • Helena Rasche Introduction to Using Galaxy (Galaxy 101) GermanyMo Heydarian • Jennifer Hillman-Jackson

12:00 CEST

Lunch Konzerthaus

13:00 CEST

Beyond the Intro: Further Adventures in Using Galaxy GermanyMo Heydarian • Jennifer Hillman-Jackson Introduction to Galaxy Administration II GreeceEnis Afgan • Simon Gladman • Martin Čech • Marius van den Beek • John Chilton • Nate Coraor • Helena Rasche

15:00 CEST

Break Konzerthaus

15:30 CEST

Analyzing Large / Complex Experimental Designs with Galaxy GermanyDan Blankenberg • Marius van den Beek • Mo Heydarian • Jennifer Hillman-Jackson Introduction to Galaxy Administration III GreeceEnis Afgan • Simon Gladman • Martin Čech • John Chilton • Nate Coraor • Helena Rasche

18:00 CEST

Birds-of-a-Feather (BoFs), with Your Dinner! Offsite BOF: Single Cell OffsiteMehmet Tekman Genome Annotation BoF OffsiteNathan Dunn • Helena Rasche The Computational Chemistry BoF OffsiteBjorn Gruning • Chris Barnett • Simon Bray
 
Tuesday, July 2
 

08:00 CEST

Conference Desk Open Konzerthaus

08:59 CEST

Session 1: Opening Plenary GreeceBjorn Gruning

09:00 CEST

Welcome GreeceAnika Erxleben • Bjorn Gruning

09:10 CEST

Invited Talk: Evolution of X chromosome recognition during Drosophila Dosage Compensation GreeceClaudia Isabelle Keller Valsecchi

09:40 CEST

Galaxy Australia – inside the national vision of a data commons GreeceGareth Price

10:00 CEST

A Machine Learning Tool Suite for Galaxy GreeceJeremy Goecks

10:20 CEST

An Update on Galaxy Workflows: More Accessible, Expressive, Robust, and Scalable GreeceJohn Chilton • Marius van den Beek

10:30 CEST

Break / Sponsors Konzerthaus

10:59 CEST

Session 2: Administration & Development GreeceHelena Rasche Session 2: Outside the Genome & Community Track GermanyYvan Le Bras

11:00 CEST

GalaxyCloudRunner: Streamlined Cloud Bursting for Galaxy GreeceNuwan Goonasekera Galaxy Computational Chemistry GermanyChris Barnett

11:07 CEST

Laniakea: A Galaxy-on-demand Provider Platform Through Cloud Technologies GreeceMarco Antonio Tangaro

11:20 CEST

Climate Analysis with Galaxy GermanyAnne Fouilloux

11:27 CEST

Enabling Single Sign-On for Multiple Galaxy Instances GreeceEnis Afgan

11:34 CEST

How – And How not – to manage successful local Galaxies deployments GreecePhilip Mabon

11:40 CEST

Galaxy Image Analysis: Web-based microscopy image analysis and cellular phenotyping GermanyThomas Wollmann

11:54 CEST

Building a Pulsar Network across Europe GreeceGianmauro Cuccuru

12:00 CEST

Lunch Konzerthaus

12:15 CEST

Arts & Crafts CzechiaSaskia Hiltemann • Helena Rasche Birds-of-a-Feather (BoFs), with Lunch Konzerthaus BOF: Galaxy Workflow Discovery (IWC) SpainBrad Langhorst BoF: Remote computation with Pulsar FranceGianmauro Cuccuru BoF: Using Galaxy in automated production setups ItalyPablo Moreno

13:19 CEST

Session 3: Training Konzerthaus

13:20 CEST

16S analysis with mothur BelgiumSaskia Hiltemann ChIP-seq data analysis ItalyLeily Rabbani • Devon Ryan EWAS data analysis for population epigenetics integrated into Galaxy - Epigenetics FranceKrzysztof Poterlowicz How to create a Galaxy Tool GreeceJohn Chilton • Nicola Soranzo Quality control of HTS data Germany Variant calling I - from sequenced reads to variant lists SpainWolfgang Maier

14:50 CEST

Poster 01 A: Alternative Splicing Analysis: The Silencing of the Human Colon Oxidase Complex KonzerthausBeáta Scholtz Poster 04 A: Gene Expression Analysis of In vitro Anti-filarial Activity of Natural and Synthetic Sesquiterpene Lactones from the Plant Neurolaena lobata KonzerthausLizzette Perez-Perez Poster 07 A: Knockdown Effects of MAGOHB on Alternative Splicing Via RNA-Seq Analysis KonzerthausGlory Basumata Poster 10 A: Dima: Data-driven recommendation for a high-performing imputation algorithm KonzerthausJanine Egert Poster 13 A: Evaluation of tools and workflows for database construction for environmental metaproteomics KonzerthausVirginie Jouffret Poster 16 A: Predicting Gene Expression from Histone Modifications and Chronological Age by RNA-Seq Data using Galaxy Machine Learning Tools KonzerthausAlireza Khanteymoori Poster 19 A: EpiGeEC allows fast comparison of user datasets with thousands of public epigenomic datasets through Galaxy KonzerthausJonathan Laperle Poster 22 A: Laniakea: A Galaxy-on-demand Provider Platform Through Cloud Technologies KonzerthausMarco Antonio Tangaro Poster 25 A: Building a Galaxy Trusted Server to Ensure Privacy and Ownership in Genomic Research KonzerthausGuokun Zhang Poster 28 A: InteractoMIX integration in Galaxy KonzerthausPatricia Mirela Bota Poster 31 A: Development and implementation of a Galaxy instance geared towards microbiological applications within an applied public health setting Konzerthaus Poster 34 A: A Newly Opened Galaxy Platform at Clermont Auvergne University KonzerthausNadia Goué Poster 37 A: Galaxy Genome Annotation Project: Easier Genome Annotation Using Galaxy and GMOD Tools KonzerthausAnthony Bretaudeau Poster 40 A: Aequatus.js: a plugin to visualise gene trees in Galaxy KonzerthausAnil S. Thanki Poster 43 A: Galaxy and Training: 2019 updates from the Galaxy Training Network KonzerthausBérénice Batut Poster 46 A: Galaxy-E project: 2019 news KonzerthausYvan Le Bras Poster 49 A: Mining hot topics in stem cells by combining text mining and scientometrics KonzerthausZhengyin Hu • Xiaomei Wang Poster 52 A: Poster: Science Data Center BioDATEN in relation to the Galaxy Community KonzerthausBjorn Gruning Session 4: Posters, Demos, and Sponsors Konzerthaus

15:00 CEST

Demo 01 A: Galaxy Computational Chemistry SpainChris Barnett Demo 03 A: Analysing and organising large-scale metabolome annotation studies with Django, ISA and Galaxy FranceThomas N. Lawson

15:25 CEST

Demo 02 A: Climate Analysis with Galaxy SpainAnne Fouilloux Demo 04 A: GalaxyCloudRunner: Streamlined Cloud Bursting for Galaxy FranceNuwan Goonasekera

15:49 CEST

Session 5: Training Konzerthaus

15:50 CEST

Hi-C analysis ItalyLeily Rabbani • Joachim Wolff Machine Learning with Galaxy - Predict age from RNA-seq dataset GermanyAlireza Khanteymoori • Jeremy Goecks • Anup Kumar Metatranscriptomics and multi-omics functional microbiome analysis BelgiumTimothy J. Griffin • Bérénice Batut • Ray Sajulga • Pratik Jagtap Scripting Galaxy through BioBlend GreeceMarius van den Beek • Nicola Soranzo Variant Calling II - causative variant discovery SpainWolfgang Maier

17:20 CEST

Group Picture Konzerthaus

17:29 CEST

Session 6: Epigenetics Track & Late Breaking Lightning Talks GreeceDevon Ryan Session 6: Outside the Genome & Community Track GermanyAnne Fouilloux

17:30 CEST

HiCExplorer 3: A toolbox for Hi-C data analysis GreeceJoachim Wolff Using Galaxy for Creation and Execution of Text Mining Workflows in the OpenMinTeD platform GermanyDimitrios Galanis

17:50 CEST

Histone Deacetylases 1/2 In Microglia Function During Development And Neurodegeneration GreeceMaximilian Frosch To Better Benefit from Shared Tasks in Biomedical Text Mining GermanyMouhamadou Ba

17:57 CEST

Analysis and visualization of the human cardiac myocyte epigenome using Galaxy GreeceRalf Gilsbach The LAPPS Grid/Galaxy Platform for Mining Scientific Publications GermanyAlexandru Mahmoud

18:17 CEST

Training Infrastructure as a Service GreeceHelena Rasche Infrastructure for Healthier Living: Galaxy at Quadram Institute Bioscience GermanyThanh Le Viet Late Breaking Lightning Talks Greece

18:24 CEST

How Usable is Galaxy? A Usability Evaluation of Galaxy GermanyNgoc-Huy Truong

19:00 CEST

Galaxy Runners: Tuesday Edition OffsiteFlorian Eggenhofer • Anika Erxleben Birds-of-a-Feather (BoFs), with Your Dinner! Offsite The Freiburg City Tour BoF! OffsiteFULL The Galaxy Training Network BoF! OffsiteSaskia Hiltemann • Bérénice Batut • Helena Rasche
 
Wednesday, July 3
 

08:00 CEST

Conference Desk Open Konzerthaus

08:59 CEST

Session 7: Administration & Development Track GreeceSimon Gladman Session 7: Transcriptomics & Genomics Track GermanyAnna Syme

09:00 CEST

Containerizing Galaxy server as a Singularity application on HPC clusters for GenAP GreeceDavid Morais Invited Talk: Pou5f3, SoxB1 and Nanog control the Zygotic Genome Activation in Zebrafish by Chromatin Remodeling GermanyMarina Veil

09:20 CEST

Galaxy on Kubernetes: where we are and future challenges GreecePablo Moreno

09:30 CEST

Single-cell RNA Analysis in Galaxy on 10X Datasets GermanyMehmet Tekman

09:40 CEST

A Minimal Docker Image for Galaxy GreeceJohn Davis

09:47 CEST

CVMFS-CSI for Galaxy: Efficient Access to Read-only Data in Kubernetes GreeceAlexandru Mahmoud

09:50 CEST

Biology-driven classification of Single-Cells RNAseq data in Galaxy GermanyChristophe Antoniewski

09:54 CEST

gxadmin: usegalaxy.* administration wisdom GreeceHelena Rasche

10:10 CEST

Improving Transcriptome Analysis with Molecular Indices and Galaxy GermanyBrad Langhorst

10:14 CEST

Galaxy container for Hinxton Single Cell Interactive Analysis Portal (HiSciAP) GreeceJonathan Manning

10:17 CEST

Transposon Insertion Sequencing Analysis in Galaxy GermanyDelphine Lariviere

10:30 CEST

Break / Sponsors Konzerthaus

10:59 CEST

Session 8: Administration & Development Track GreeceDavid Morais Session 8: Transcriptomics & Genomics Track GermanyAnshu Bhardwaj

11:00 CEST

Working Effectively with Remote Data in Galaxy - A Progress Report GreeceJohn Chilton Aequatus.js: a plugin to visualise gene trees in Galaxy GermanyAnil S. Thanki

11:07 CEST

Testing and Visualizing the State of Galaxy Tools and Workflows GreeceMartin Čech

11:20 CEST

Visual Refinement of Genome Annotations with Apollo in a Community Environment GermanyNathan Dunn

11:27 CEST

Setting up a Galaxy Platform in a HPC Infrastructure for Genomics Implementation into Diagnosis Routines for a Health Reference Center GreeceMiguel Juliá Architectural and Systems Improvements to G-OnRamp, a Collaborative Eukaryotic Genome Annotation Platform GermanyLuke Sargent

11:34 CEST

RealTimeTools: Integrating, Customizing, and Accessing UI-based Tools in Galaxy GreeceDan Blankenberg ChiRA: an integrated framework for Chimeric Read Annotation GermanyPavankumar Videm

11:54 CEST

Creating a Universe of Galaxies: The UseGalaxy.* Project GreeceNate Coraor Training experience on “Data analysis and interpretation for clinical genomics” using Galaxy GermanyGianmauro Cuccuru

12:00 CEST

Lunch Konzerthaus

12:15 CEST

Arts & Crafts CzechiaSaskia Hiltemann • Helena Rasche Birds-of-a-Feather (BoFs), with Lunch Konzerthaus BoF: Galactic Visualisation! ItalySaskia Hiltemann • Helena Rasche • Anil S. Thanki BoF: Multi-omics FranceTimothy J. Griffin • Pratik Jagtap EOSC-Life roadmap BOF SpainJean-Karim Heriche

13:19 CEST

Session 9: Training Konzerthaus

13:20 CEST

Galaxy Code Architecture GreeceJohn Chilton • Nate Coraor Single cell RNA-seq analysis GermanyAlex Ostrovsky • Mehmet Tekman The RNA workbench, best practices for RNA and high-throughput sequencing bioinformatics in Galaxy - RNA and transcriptomics FranceJoerg Fallmann • Florian Eggenhofer Train the Galaxy Trainer SpainSaskia Hiltemann • Helena Rasche • Simon Gladman • Bérénice Batut • Anna Syme Visualization of HTS Data in Galaxy Italy

14:50 CEST

Poster 14 B: Modulation of Nav1.5 mechanosensitivity by β1 and β3 subunits KonzerthausMichele Maroni Poster 02 B: Galaxy container for Hinxton Single Cell Interactive Analysis Portal (HiSciAP) KonzerthausJonathan Manning Poster 05 B: Improving Transcriptome Analysis with Molecular Indices and Galaxy KonzerthausBrad Langhorst Poster 08 B: Transposon Insertion Sequencing Analysis in Galaxy KonzerthausDelphine Lariviere Poster 11 B: LC-MS/MS tool and interactive visualizations integration on Galaxy Workflow4Metabolomics infrastructure KonzerthausRomain Dallet Poster 17 B: Analysis and visualization of the human cardiac myocyte epigenome using Galaxy KonzerthausRalf Gilsbach Poster 20 B: Testing and Visualizing the State of Galaxy Tools and Workflows KonzerthausMartin Čech Poster 23 B: Galaxy on Kubernetes: where we are and future challenges KonzerthausPablo Moreno Poster 26 B: RealTimeTools: Integrating, Customizing, and Accessing UI-based Tools in Galaxy KonzerthausDan Blankenberg Poster 29 B: ARIAWeb: a new web service for automated NMR structure calculation with ARIA KonzerthausFabien Mareuil Poster 32 B: The IRIDA Platform for Microbial Genomics KonzerthausAaron Petkau Poster 35 B: NanoGalaxy: A Galaxy toolkit and workflows for long-read sequencing KonzerthausWillem de Koning Poster 38 B: Visual Refinement of Genome Annotations with Apollo in a Community Environment KonzerthausNathan Dunn Poster 41 B: Training experience on “Data analysis and interpretation for clinical genomics” using Galaxy KonzerthausGianmauro Cuccuru Poster 44 B: A brief overview on how bilille is using Galaxy for sharing knowledge, computational resources & tools. KonzerthausLoïc Couderc Poster 47 B: Climate Analysis with Galaxy KonzerthausAnne Fouilloux Poster 50 B: Using Galaxy for Creation and Execution of Text Mining Workflows in the OpenMinTeD platform KonzerthausDimitrios Galanis Poster 53 B: UseGalaxy.eu: Community, Training, Infrastructure, and Users KonzerthausHelena Rasche Session 10: Posters, Demos, and Sponsors Konzerthaus

15:00 CEST

Demo 05 B: Combat-tb Workbench, A Customizable Platform For Variant Discovery And Annotation, Phylogeny Construction And Variant Prioritisation BelgiumZiphozakhe Mashologu Demo 07 B: Knockdown Effects of MAGOHB on Alternative Splicing Via RNA-Seq Analysis SpainGlory Basumata Demo 15 B: CWL in Galaxy, 2019-06 snapshot ItalyMichael R. Crusoe • John Chilton • Hervé Ménager

15:25 CEST

Demo 06 B: ProteoRE, a Galaxy-based platform for the annotation and the interpretation of proteomics data in biomedical research BelgiumFlorence Combes Demo 08 B: Tool Prediction in Galaxy Workflows using Deep Learning SpainAnup Kumar

15:49 CEST

Session 11: Training Konzerthaus

15:50 CEST

Beyond the Intro: Further Adventures in Using Galaxy ItalyMo Heydarian • Jennifer Hillman-Jackson Making your open source project awesome SpainBérénice Batut • Yo Yehudi Running Galaxy on Kubernetes GreecePablo Moreno • John Davis • Enis Afgan • Nuwan Goonasekera • Alexandru Mahmoud Single cell RNA-seq analysis II GermanyAlex Ostrovsky • Mehmet Tekman Visualisation development in Galaxy FranceAnup Kumar • Sam Guerler • Jeremy Goecks

17:29 CEST

Session 12: Plenary GreeceFrederik Coppens

17:30 CEST

Invited Talk: Galaxy Community Update GreeceAnton Nekrutenko • James Taylor

18:00 CEST

Tool Prediction in Galaxy Workflows using Deep Learning GreeceAnup Kumar

18:07 CEST

Street Science Community: make science tangible & accessible by bringing it to the “street” with open science workshops GreeceTeresa Müller

19:30 CEST

Conference Dinner Offsite
 
Thursday, July 4
 

08:00 CEST

Conference Desk Open Konzerthaus

08:59 CEST

Session 13:Outside the Genome & Community Track GermanyBérénice Batut Session 13: Proteomics & Metabolomics & Late Breaking Track GreeceMelanie Föll

09:00 CEST

Metaproteomics Powered By Metatranscriptomics: Towards a Multi-omic Functional Microbiome Analysis Within Galaxy GreecePratik Jagtap Invited Talk: Data visualisation by citizen science participants: the case of birds and bats monitoring schemes and Galaxy-E GermanyYves Bas • Romain Lorrillière

09:20 CEST

Interactive Galaxy Visualizations for Multi-omics Research GreeceRay Sajulga

09:27 CEST

ProteoRE, a Galaxy-based platform for the annotation and the interpretation of proteomics data in biomedical research GreeceFlorence Combes

09:30 CEST

Galaxy-Bricks a Tool for Data Literacy and Scientific Approach Education in the Context of Citizen Science GermanySimon Bénateau

09:37 CEST

CITIZEN SCIENCE PROJECT in ECOLOGY with the GALAXY-E PLATFORM GermanyBenjamin Yguel

09:44 CEST

Galaxy-E project: 2019 news GermanyYvan Le Bras

09:47 CEST

Galaxy Wrapper for MaxQuant GreeceDamian Glätzer

09:54 CEST

Application of Halogen Bonding in Molecular and Drug Design Facilitated by a Galaxy Webserver GreeceFrank M. Boeckler

10:04 CEST

The ChemicalToolBox - Computational Chemistry in Galaxy GermanySimon Bray

10:11 CEST

Improved Reference Data Management in Galaxy: Towards a Plant Data Analysis Platform GermanyIgnacio Eguinoa

10:14 CEST

Rootless Galaxy Docker, with Backup, for our Lab Intranet GreeceArthur Eschenlauer Late Breaking Lightning Talks Greece

10:18 CEST

Use Galaxy, Right Now! GermanyHelena Rasche • Dave Clements

10:21 CEST

CFSAN GalaxyTrakr GreeceCharles Strittmatter

10:25 CEST

Galaxy Publication Library GermanyDave Clements

10:30 CEST

Break / Sponsors Konzerthaus

10:59 CEST

Session 14: Proteomics & Metabolomics GreecePratik Jagtap Session 14: Variation, Metagenomics & Assembly Track GermanySaskia Hiltemann

11:00 CEST

Analysing and organising large-scale metabolome annotation studies with Django, ISA and Galaxy GreeceThomas N. Lawson The IRIDA Platform for Microbial Genomics GermanyAaron Petkau

11:20 CEST

Combat-tb Workbench, A Customizable Platform For Variant Discovery And Annotation, Phylogeny Construction And Variant Prioritisation GermanyZiphozakhe Mashologu Reproducible and accessible analysis of spatially resolved proteomics and metabolomics data GreeceMelanie Föll

11:27 CEST

High throughput HIV next generation sequence analysis in Galaxy GermanyDave Bouvier

11:40 CEST

Workflow4Metabolomics: an international computing infrastructure for Metabolomics GreeceMélanie Petera • Romain Dallet • Gildas Le Corguillé

11:47 CEST

NanoGalaxy: A Galaxy toolkit and workflows for long-read sequencing GermanyWillem de Koning

11:54 CEST

MITOLINK: An integrated Web-based Workflow System to Evaluate Genotype-Phenotype Correlations in Human Mitochondrial Diseases GermanyAnshu Bhardwaj

12:00 CEST

Lunch Konzerthaus

12:15 CEST

Arts & Crafts CzechiaSaskia Hiltemann • Helena Rasche Birds-of-a-Feather (BoFs), with Lunch Konzerthaus BoF: Metabolomics: Tools, Resources, and Needs ItalyArthur Eschenlauer BoF: Text Mining / NLP BelgiumSebastian Schaaf Galaxy containers BoF FranceEnis Afgan • Bjorn Gruning • Marius van den Beek • Nuwan Goonasekera • Pablo Moreno

13:20 CEST

15: Training Session Konzerthaus Assembly, annotation and analysis of bacterial genomes ItalyDelphine Lariviere • Anna Syme CVMFS and Pulsar GreeceSimon Gladman • Nate Coraor • Gianmauro Cuccuru • Helena Rasche Import, handle, visualize and analyze biodiversity data in Galaxy SpainYvan Le Bras • Simon Bénateau Machine Learning with Galaxy - Predict age from DNA-methylation dataset GermanyAlireza Khanteymoori • Anup Kumar Metabolomics data analysis I FranceRalf Weber • Gildas Le Corguillé • Mélanie Petera • Thomas N. Lawson Proteomic data analysis with Galaxy BelgiumMatthias Fahrner • Maren Stillger • Melanie Föll

14:50 CEST

16: Poster, Demo, and Sponsor Session Konzerthaus Poster 03 C: Galaxy in fields, gardens and greenhouses for better seeds. KonzerthausMichael Faubladier • Camille Segard • Frederic Sapet Poster 06 C: miRGalaxy: Galaxy tool for miRNA Analysis of NGS datasets (sRNA-seq) KonzerthausIlias Glogovitis Poster 09 C: Development and Deployment of a Workflow for the Genomic Analysis of Campylobacter Jejuni KonzerthausJosé Antonio Barbero Aparicio Poster 12 C: Reproducible and accessible analysis of spatially resolved proteomics and metabolomics data KonzerthausMelanie Föll Poster 15 C: A new Galaxy Wrapper for MaxQuant KonzerthausDamian Glätzer Poster 18 C: Applying new model for predicting effects of gene variants in epigenetic regulators within Galaxy environment KonzerthausTamara Drljača Poster 21 C: Improved Reference Data Management in Galaxy: Towards a Plant Data Analysis Platform KonzerthausIgnacio Eguinoa Poster 24: Galaxy In A Large Scale Production Environment KonzerthausSascha Kastens Poster 27 C: Galaxy on Site: Flexibility without Tears KonzerthausArthur Eschenlauer Poster 30 C: Towards a platform for genomics medicine KonzerthausWolfgang Maier Poster 33 C: HiCExplorer 3: A toolbox for Hi-C data analysis KonzerthausJoachim Wolff Poster 36 C: EDAM: the ontology of bioinformatics operations, types of data, topics, and data formats (2019 update) KonzerthausMatúš Kalaš Poster 39 C: Deployment of Genome Databases for Algae Using Galaxy Genome Annotation KonzerthausLoraine Guéguen Poster 42 C: Experience of Galaxy training at a biomedical institute KonzerthausMaria Doyle Poster 45 C: Galaxy-Bricks a Tool for Data Literacy and Scientific Approach Education in the Context of Citizen Science KonzerthausSimon Bénateau Poster 48 C: The ChemicalToolBox - Computational Chemistry in Galaxy KonzerthausSimon Bray Poster 51 C: How Usable is Galaxy? A Usability Evaluation of Galaxy KonzerthausNgoc-Huy Truong Poster 54 C: TrackFind: FAIR Search of Genomic Tracks KonzerthausRadmila Kompova

15:00 CEST

Demo 10 C: Interactive Galaxy Visualizations for Multi-omics Research SpainRay Sajulga Demo 12 C: Visual Refinement of Genome Annotations with Apollo in a Community Environment FranceNathan Dunn Demo 14 C: Galaxy on Kubernetes BelgiumJohn Davis • Enis Afgan • Alexandru Mahmoud • Nuwan Goonasekera

15:25 CEST

Demo 11 C: NanoGalaxy: A Galaxy toolkit and workflows for long-read sequencing SpainWillem de Koning Demo 13 C: The IRIDA Platform for Microbial Genomics FranceAaron Petkau

15:50 CEST

17: Training Session Konzerthaus ELIXIR Galaxy AAI: Authentication and Authorisation Infrastructure ItalyKjetil Klepper Genomic assembly and data analysis in Galaxy with Nanopore ONT long read sequencing GreeceWillem de Koning • Saskia Hiltemann • Milad Miladi Handling integrated biological data using Python, Jupyter, and InterMine GermanyKevin Reierskog • Yo Yehudi MALDI imaging of peptides data analysis BelgiumMatthias Fahrner • Maren Stillger • Melanie Föll Metabolomics data analysis II FranceRalf Weber • Thomas N. Lawson • Gildas Le Corguillé • Mélanie Petera Population genomics with RADseq SpainSimon Bénateau • Yvan Le Bras

17:29 CEST

Session 18: Closing Plenary GreeceAndrew Lonie

17:30 CEST

Invited Talk: UseGalaxy: Elucidating chromatin biology of mouse cardiomyocytes GreeceStephan Nothjunge

18:00 CEST

Galaxy and Training: 2019 updates from the Galaxy Training Network GreeceBérénice Batut

18:20 CEST

Closing GreeceDave Clements • Bjorn Gruning • Anika Erxleben

19:00 CEST

BIKE - Lets Do It! : BoF for Galaxy Bikers (Bicycling). OffsitePratik Jagtap • Melanie Föll • Magnus Palmsblad Galaxy Runners: Thursday Edition OffsiteFlorian Eggenhofer • Anika Erxleben Birds-of-a-Feather (BoFs), with Your Dinner! Offsite Intergalactic Utilities Commission (IUC) BoF OffsiteBjorn Gruning • Marius van den Beek • John Chilton • Nicola Soranzo • Saskia Hiltemann • Bérénice Batut • Dan Blankenberg • Helena Rasche The Freiburg City Tour BoF! OffsiteFILLING
 
Friday, July 5
 

08:00 CEST

Conference Desk Open Konzerthaus

09:00 CEST

CollaborationFest: Core Konzerthaus
 
Saturday, July 6
 

08:00 CEST

Conference Desk Open Konzerthaus

09:00 CEST

CollaborationFest: Core Konzerthaus
 
Sunday, July 7
 

08:00 CEST

Conference Desk Open University of Freiburg Compute Center

09:00 CEST

CollaborationFest: Encore University of Freiburg Compute Center
 
Monday, July 8
 

08:00 CEST

Conference Desk Open University of Freiburg Compute Center

09:00 CEST

CollaborationFest: Encore University of Freiburg Compute Center