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The 2019
Galaxy Community Conference (GCC2019)
was held in Freiburg, Germany, 1-8 July. There was
one day of training
,
three days of mixed meeting and training
, and then
two to four days of CollaborationFest
. The meeting featured joint & parallel sessions; invited, accepted, and lightning talks;
poster
and
demo
sessions;
birds-of-a-feather meetups
;
social events
; and training sessions every day.
Thanks to everyone who helped make GCC2019 a success!
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A. Training
All
Admin / Dev
Diverse Communities
Epigenetics
Introduction / General
Metagenomics / Assembly
Proteomics / Metabolomics
Transciptomics / Genome Variation
B. Talks: Admin / Dev
All
Session 2
Session 7
Session 8
B. Talks: Epigenetics
All
Session 6
B. Talks: General
B. Talks: Outside the Genome & Community
All
Session 13
Session 2
Session 6
B. Talks: Proteomics / Metabolomics
All
Session 13
Session 14
B. Talks: Transcriptomics / Genomics
All
Session 7
Session 8
B. Talks: Variation / Metagenomics / Assembly
All
Session 14
C. Posters / Demos / Sponsors
All
Demos
Posters
Sponsors
D. Break / Social / Networking / Meal
All
BoFs
Break
Demos
Meal
Sponsors
E. Help
F. CollaborationFest: Core
G. CollaborationFest: Encore
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Wednesday
, July 3
14:50 CEST
Poster 14 B: Modulation of Nav1.5 mechanosensitivity by β1 and β3 subunits
Konzerthaus
Michele Maroni
Poster 02 B: Galaxy container for Hinxton Single Cell Interactive Analysis Portal (HiSciAP)
Konzerthaus
Jonathan Manning
Poster 05 B: Improving Transcriptome Analysis with Molecular Indices and Galaxy
Konzerthaus
Brad Langhorst
Poster 08 B: Transposon Insertion Sequencing Analysis in Galaxy
Konzerthaus
Delphine Lariviere
Poster 11 B: LC-MS/MS tool and interactive visualizations integration on Galaxy Workflow4Metabolomics infrastructure
Konzerthaus
Romain Dallet
Poster 17 B: Analysis and visualization of the human cardiac myocyte epigenome using Galaxy
Konzerthaus
Ralf Gilsbach
Poster 20 B: Testing and Visualizing the State of Galaxy Tools and Workflows
Konzerthaus
Martin Čech
Poster 23 B: Galaxy on Kubernetes: where we are and future challenges
Konzerthaus
Pablo Moreno
Poster 26 B: RealTimeTools: Integrating, Customizing, and Accessing UI-based Tools in Galaxy
Konzerthaus
Daniel Blankenberg
Poster 29 B: ARIAWeb: a new web service for automated NMR structure calculation with ARIA
Konzerthaus
Fabien Mareuil
Poster 32 B: The IRIDA Platform for Microbial Genomics
Konzerthaus
Aaron Petkau
Poster 35 B: NanoGalaxy: A Galaxy toolkit and workflows for long-read sequencing
Konzerthaus
Willem de Koning
Poster 38 B: Visual Refinement of Genome Annotations with Apollo in a Community Environment
Konzerthaus
Nathan Dunn
Poster 41 B: Training experience on “Data analysis and interpretation for clinical genomics” using Galaxy
Konzerthaus
Gianmauro Cuccuru
Poster 44 B: A brief overview on how bilille is using Galaxy for sharing knowledge, computational resources & tools.
Konzerthaus
Loïc Couderc
Poster 47 B: Climate Analysis with Galaxy
Konzerthaus
Anne Fouilloux
Poster 50 B: Using Galaxy for Creation and Execution of Text Mining Workflows in the OpenMinTeD platform
Konzerthaus
Dimitrios Galanis
Poster 53 B: UseGalaxy.eu: Community, Training, Infrastructure, and Users
Konzerthaus
Helena Rasche
Session 10: Posters, Demos, and Sponsors
Konzerthaus
15:00 CEST
Demo 05 B: Combat-tb Workbench, A Customizable Platform For Variant Discovery And Annotation, Phylogeny Construction And Variant Prioritisation
Belgium
Ziphozakhe Mashologu
Demo 07 B: Knockdown Effects of MAGOHB on Alternative Splicing Via RNA-Seq Analysis
Spain
Glory Basumata
Demo 15 B: CWL in Galaxy, 2019-06 snapshot
Italy
Michael R. Crusoe • John Chilton • Hervé Ménager
15:25 CEST
Demo 06 B: ProteoRE, a Galaxy-based platform for the annotation and the interpretation of proteomics data in biomedical research
Belgium
Florence Combes
Demo 08 B: Tool Prediction in Galaxy Workflows using Deep Learning
Spain
Anup Kumar
Timezone
GCC2019
Europe/Berlin
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Freiburg, Germany
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Konzerthaus
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University of Freiburg Compute Center
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A. Training
All
Admin / Dev
Diverse Communities
Epigenetics
Introduction / General
Metagenomics / Assembly
Proteomics / Metabolomics
Transciptomics / Genome Variation
B. Talks: Admin / Dev
All
Session 2
Session 7
Session 8
B. Talks: Epigenetics
All
Session 6
B. Talks: General
B. Talks: Outside the Genome & Community
All
Session 13
Session 2
Session 6
B. Talks: Proteomics / Metabolomics
All
Session 13
Session 14
B. Talks: Transcriptomics / Genomics
All
Session 7
Session 8
B. Talks: Variation / Metagenomics / Assembly
All
Session 14
C. Posters / Demos / Sponsors
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D. Break / Social / Networking / Meal
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BoFs
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E. Help
F. CollaborationFest: Core
G. CollaborationFest: Encore
Recently Active Attendees
Jennifer Vaughn
R
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Scott Edmunds
C
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Delphine Lariviere
Hans-Rudolf Hotz
Michael Faubladier
Frederic Sapet
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Dates
Monday
, July 1
Tuesday
, July 2
Wednesday
, July 3
Thursday
, July 4
Friday
, July 5
Saturday
, July 6
Sunday
, July 7
Monday
, July 8
Types
A. Training
All
Admin / Dev
Diverse Communities
Epigenetics
Introduction / General
Metagenomics / Assembly
Proteomics / Metabolomics
Transciptomics / Genome Variation
B. Talks: Admin / Dev
All
Session 2
Session 7
Session 8
B. Talks: Epigenetics
All
Session 6
B. Talks: General
B. Talks: Outside the Genome & Community
All
Session 13
Session 2
Session 6
B. Talks: Proteomics / Metabolomics
All
Session 13
Session 14
B. Talks: Transcriptomics / Genomics
All
Session 7
Session 8
B. Talks: Variation / Metagenomics / Assembly
All
Session 14
C. Posters / Demos / Sponsors
All
Demos
Posters
Sponsors
D. Break / Social / Networking / Meal
All
BoFs
Break
Demos
Meal
Sponsors
E. Help
F. CollaborationFest: Core
G. CollaborationFest: Encore
Venues
Belgium
Czechia
France
Germany
Greece
Italy
Konzerthaus
Offsite
Spain
University of Freiburg Compute Center