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The 2019
Galaxy Community Conference (GCC2019)
was held in Freiburg, Germany, 1-8 July. There was
one day of training
,
three days of mixed meeting and training
, and then
two to four days of CollaborationFest
. The meeting featured joint & parallel sessions; invited, accepted, and lightning talks;
poster
and
demo
sessions;
birds-of-a-feather meetups
;
social events
; and training sessions every day.
Thanks to everyone who helped make GCC2019 a success!
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A. Training
All
Admin / Dev
Diverse Communities
Epigenetics
Introduction / General
Metagenomics / Assembly
Proteomics / Metabolomics
Transciptomics / Genome Variation
B. Talks: Admin / Dev
All
Session 2
Session 7
Session 8
B. Talks: Epigenetics
All
Session 6
B. Talks: General
B. Talks: Outside the Genome & Community
All
Session 13
Session 2
Session 6
B. Talks: Proteomics / Metabolomics
All
Session 13
Session 14
B. Talks: Transcriptomics / Genomics
All
Session 7
Session 8
B. Talks: Variation / Metagenomics / Assembly
All
Session 14
C. Posters / Demos / Sponsors
All
Demos
Posters
Sponsors
D. Break / Social / Networking / Meal
All
BoFs
Break
Demos
Meal
Sponsors
E. Help
F. CollaborationFest: Core
G. CollaborationFest: Encore
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Venue:
Germany
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Wednesday
, July 3
08:59 CEST
Session 7: Transcriptomics & Genomics Track
Germany
Anna Syme
09:00 CEST
Invited Talk: Pou5f3, SoxB1 and Nanog control the Zygotic Genome Activation in Zebrafish by Chromatin Remodeling
Germany
Marina Veil
09:30 CEST
Single-cell RNA Analysis in Galaxy on 10X Datasets
Germany
Mehmet Tekman
09:50 CEST
Biology-driven classification of Single-Cells RNAseq data in Galaxy
Germany
Christophe Antoniewski
10:10 CEST
Improving Transcriptome Analysis with Molecular Indices and Galaxy
Germany
Brad Langhorst
10:17 CEST
Transposon Insertion Sequencing Analysis in Galaxy
Germany
Delphine Lariviere
10:59 CEST
Session 8: Transcriptomics & Genomics Track
Germany
Anshu Bhardwaj
11:00 CEST
Aequatus.js: a plugin to visualise gene trees in Galaxy
Germany
Anil S. Thanki
11:20 CEST
Visual Refinement of Genome Annotations with Apollo in a Community Environment
Germany
Nathan Dunn
11:27 CEST
Architectural and Systems Improvements to G-OnRamp, a Collaborative Eukaryotic Genome Annotation Platform
Germany
Luke Sargent
11:34 CEST
ChiRA: an integrated framework for Chimeric Read Annotation
Germany
Pavankumar Videm
11:54 CEST
Training experience on “Data analysis and interpretation for clinical genomics” using Galaxy
Germany
Gianmauro Cuccuru
13:20 CEST
Single cell RNA-seq analysis
Germany
Alex Ostrovsky • Mehmet Tekman
15:50 CEST
Single cell RNA-seq analysis II
Germany
Alex Ostrovsky • Mehmet Tekman
Timezone
GCC2019
Europe/Berlin
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University of Freiburg Compute Center
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A. Training
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Admin / Dev
Diverse Communities
Epigenetics
Introduction / General
Metagenomics / Assembly
Proteomics / Metabolomics
Transciptomics / Genome Variation
B. Talks: Admin / Dev
All
Session 2
Session 7
Session 8
B. Talks: Epigenetics
All
Session 6
B. Talks: General
B. Talks: Outside the Genome & Community
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Session 13
Session 2
Session 6
B. Talks: Proteomics / Metabolomics
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Session 13
Session 14
B. Talks: Transcriptomics / Genomics
All
Session 7
Session 8
B. Talks: Variation / Metagenomics / Assembly
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Session 14
C. Posters / Demos / Sponsors
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D. Break / Social / Networking / Meal
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BoFs
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E. Help
F. CollaborationFest: Core
G. CollaborationFest: Encore
Recently Active Attendees
Jennifer Vaughn
R
rimmfus
Scott Edmunds
C
charleshicktw
Delphine Lariviere
Hans-Rudolf Hotz
Michael Faubladier
Frederic Sapet
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Dates
Monday
, July 1
Tuesday
, July 2
Wednesday
, July 3
Thursday
, July 4
Friday
, July 5
Saturday
, July 6
Sunday
, July 7
Monday
, July 8
Types
A. Training
All
Admin / Dev
Diverse Communities
Epigenetics
Introduction / General
Metagenomics / Assembly
Proteomics / Metabolomics
Transciptomics / Genome Variation
B. Talks: Admin / Dev
All
Session 2
Session 7
Session 8
B. Talks: Epigenetics
All
Session 6
B. Talks: General
B. Talks: Outside the Genome & Community
All
Session 13
Session 2
Session 6
B. Talks: Proteomics / Metabolomics
All
Session 13
Session 14
B. Talks: Transcriptomics / Genomics
All
Session 7
Session 8
B. Talks: Variation / Metagenomics / Assembly
All
Session 14
C. Posters / Demos / Sponsors
All
Demos
Posters
Sponsors
D. Break / Social / Networking / Meal
All
BoFs
Break
Demos
Meal
Sponsors
E. Help
F. CollaborationFest: Core
G. CollaborationFest: Encore
Venues
Belgium
Czechia
France
Germany
Greece
Italy
Konzerthaus
Offsite
Spain
University of Freiburg Compute Center