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The 2019
Galaxy Community Conference (GCC2019)
was held in Freiburg, Germany, 1-8 July. There was
one day of training
,
three days of mixed meeting and training
, and then
two to four days of CollaborationFest
. The meeting featured joint & parallel sessions; invited, accepted, and lightning talks;
poster
and
demo
sessions;
birds-of-a-feather meetups
;
social events
; and training sessions every day.
Thanks to everyone who helped make GCC2019 a success!
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A. Training
All
Admin / Dev
Diverse Communities
Epigenetics
Introduction / General
Metagenomics / Assembly
Proteomics / Metabolomics
Transciptomics / Genome Variation
B. Talks: Admin / Dev
All
Session 2
Session 7
Session 8
B. Talks: Epigenetics
All
Session 6
B. Talks: General
B. Talks: Outside the Genome & Community
All
Session 13
Session 2
Session 6
B. Talks: Proteomics / Metabolomics
All
Session 13
Session 14
B. Talks: Transcriptomics / Genomics
All
Session 7
Session 8
B. Talks: Variation / Metagenomics / Assembly
All
Session 14
C. Posters / Demos / Sponsors
All
Demos
Posters
Sponsors
D. Break / Social / Networking / Meal
All
BoFs
Break
Demos
Meal
Sponsors
E. Help
F. CollaborationFest: Core
G. CollaborationFest: Encore
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Thursday
, July 4
Belgium
12:15 •
BoF: Text Mining / NLP
13:20 •
Proteomic data analysis with Galaxy
15:00 •
Demo 14 C: Galaxy on Kubernetes
15:50 •
MALDI imaging of peptides data analysis
Czechia
12:15 •
Arts & Crafts
France
12:15 •
Galaxy containers BoF
13:20 •
Metabolomics data analysis I
15:00 •
Demo 12 C: Visual Refinement of Genome Annotations with Apollo in a Community Environment
15:25 •
Demo 13 C: The IRIDA Platform for Microbial Genomics
15:50 •
Metabolomics data analysis II
Germany
08:59 •
Session 13:Outside the Genome & Community Track
09:00 •
Invited Talk: Data visualisation by citizen science participants: the case of birds and bats monitoring schemes and Galaxy-E
09:30 •
Galaxy-Bricks a Tool for Data Literacy and Scientific Approach Education in the Context of Citizen Science
09:37 •
CITIZEN SCIENCE PROJECT in ECOLOGY with the GALAXY-E PLATFORM
09:44 •
Galaxy-E project: 2019 news
10:04 •
The ChemicalToolBox - Computational Chemistry in Galaxy
10:11 •
Improved Reference Data Management in Galaxy: Towards a Plant Data Analysis Platform
10:18 •
Use Galaxy, Right Now!
10:25 •
Galaxy Publication Library
10:59 •
Session 14: Variation, Metagenomics & Assembly Track
11:00 •
The IRIDA Platform for Microbial Genomics
11:20 •
Combat-tb Workbench, A Customizable Platform For Variant Discovery And Annotation, Phylogeny Construction And Variant Prioritisation
11:27 •
High throughput HIV next generation sequence analysis in Galaxy
11:47 •
NanoGalaxy: A Galaxy toolkit and workflows for long-read sequencing
11:54 •
MITOLINK: An integrated Web-based Workflow System to Evaluate Genotype-Phenotype Correlations in Human Mitochondrial Diseases
13:20 •
Machine Learning with Galaxy - Predict age from DNA-methylation dataset
15:50 •
Handling integrated biological data using Python, Jupyter, and InterMine
Greece
08:59 •
Session 13: Proteomics & Metabolomics & Late Breaking Track
09:00 •
Metaproteomics Powered By Metatranscriptomics: Towards a Multi-omic Functional Microbiome Analysis Within Galaxy
09:20 •
Interactive Galaxy Visualizations for Multi-omics Research
09:27 •
ProteoRE, a Galaxy-based platform for the annotation and the interpretation of proteomics data in biomedical research
09:47 •
Galaxy Wrapper for MaxQuant
09:54 •
Application of Halogen Bonding in Molecular and Drug Design Facilitated by a Galaxy Webserver
10:14 •
Rootless Galaxy Docker, with Backup, for our Lab Intranet
10:14 •
Late Breaking Lightning Talks
10:21 •
CFSAN GalaxyTrakr
10:59 •
Session 14: Proteomics & Metabolomics
11:00 •
Analysing and organising large-scale metabolome annotation studies with Django, ISA and Galaxy
11:20 •
Reproducible and accessible analysis of spatially resolved proteomics and metabolomics data
11:40 •
Workflow4Metabolomics: an international computing infrastructure for Metabolomics
13:20 •
CVMFS and Pulsar
15:50 •
Genomic assembly and data analysis in Galaxy with Nanopore ONT long read sequencing
17:29 •
Session 18: Closing Plenary
17:30 •
Invited Talk: UseGalaxy: Elucidating chromatin biology of mouse cardiomyocytes
18:00 •
Galaxy and Training: 2019 updates from the Galaxy Training Network
18:20 •
Closing
Italy
12:15 •
BoF: Metabolomics: Tools, Resources, and Needs
13:20 •
Assembly, annotation and analysis of bacterial genomes
15:50 •
ELIXIR Galaxy AAI: Authentication and Authorisation Infrastructure
Konzerthaus
08:00 •
Conference Desk Open
10:30 •
Break / Sponsors
12:00 •
Lunch
12:15 •
Birds-of-a-Feather (BoFs), with Lunch
13:20 •
15: Training Session
14:50 •
Poster 51 C: How Usable is Galaxy? A Usability Evaluation of Galaxy
14:50 •
Poster 21 C: Improved Reference Data Management in Galaxy: Towards a Plant Data Analysis Platform
14:50 •
Poster 03 C: Galaxy in fields, gardens and greenhouses for better seeds.
14:50 •
16: Poster, Demo, and Sponsor Session
14:50 •
Poster 48 C: The ChemicalToolBox - Computational Chemistry in Galaxy
14:50 •
Poster 33 C: HiCExplorer 3: A toolbox for Hi-C data analysis
14:50 •
Poster 36 C: EDAM: the ontology of bioinformatics operations, types of data, topics, and data formats (2019 update)
14:50 •
Poster 54 C: TrackFind: FAIR Search of Genomic Tracks
14:50 •
Poster 09 C: Development and Deployment of a Workflow for the Genomic Analysis of Campylobacter Jejuni
14:50 •
Poster 45 C: Galaxy-Bricks a Tool for Data Literacy and Scientific Approach Education in the Context of Citizen Science
14:50 •
Poster 27 C: Galaxy on Site: Flexibility without Tears
14:50 •
Poster 42 C: Experience of Galaxy training at a biomedical institute
14:50 •
Poster 39 C: Deployment of Genome Databases for Algae Using Galaxy Genome Annotation
14:50 •
Poster 30 C: Towards a platform for genomics medicine
14:50 •
Poster 18 C: Applying new model for predicting effects of gene variants in epigenetic regulators within Galaxy environment
14:50 •
Poster 15 C: A new Galaxy Wrapper for MaxQuant
14:50 •
Poster 12 C: Reproducible and accessible analysis of spatially resolved proteomics and metabolomics data
14:50 •
Poster 06 C: miRGalaxy: Galaxy tool for miRNA Analysis of NGS datasets (sRNA-seq)
14:50 •
Poster 24: Galaxy In A Large Scale Production Environment
15:50 •
17: Training Session
Offsite
19:00 •
BIKE - Lets Do It! : BoF for Galaxy Bikers (Bicycling).
19:00 •
Galaxy Runners: Thursday Edition
19:00 •
Birds-of-a-Feather (BoFs), with Your Dinner!
19:00 •
Intergalactic Utilities Commission (IUC) BoF
19:00 •
The Freiburg City Tour BoF!
FILLING
Spain
13:20 •
Import, handle, visualize and analyze biodiversity data in Galaxy
15:00 •
Demo 10 C: Interactive Galaxy Visualizations for Multi-omics Research
15:25 •
Demo 11 C: NanoGalaxy: A Galaxy toolkit and workflows for long-read sequencing
15:50 •
Population genomics with RADseq
Timezone
GCC2019
Europe/Berlin
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B. Talks: Admin / Dev
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