Loading…
GCC2019 has ended
The 2019 Galaxy Community Conference (GCC2019) was held in Freiburg, Germany, 1-8 July.  There was one day of training, three days of mixed meeting and training, and then two to four days of CollaborationFest.  The meeting featured joint & parallel sessions; invited, accepted, and lightning talks; poster and demo sessions; birds-of-a-feather meetups; social events; and training sessions every day.

Thanks to everyone who helped make GCC2019 a success!
avatar for Aaron Petkau

Aaron Petkau

Public Health Agency of Canada
Bioinformatician
Winnipeg, Canada
Monday, July 1
 

09:00 CEST

Beer Decoded, Here and Now! Italy Conference Desk Open Konzerthaus

10:00 CEST

Introduction to Galaxy Administration I GreeceMartin Čech • Enis Afgan • Simon Gladman • Marius van den Beek • John Chilton • Nate Coraor • Helena Rasche

13:00 CEST

Introduction to Galaxy Administration II GreeceEnis Afgan • Simon Gladman • Martin Čech • Marius van den Beek • John Chilton • Nate Coraor • Helena Rasche

15:30 CEST

Introduction to Galaxy Administration III GreeceEnis Afgan • Simon Gladman • Martin Čech • John Chilton • Nate Coraor • Helena Rasche

18:00 CEST

Genome Annotation BoF OffsiteNathan Dunn • Helena Rasche
 
Tuesday, July 2
 

08:59 CEST

Session 1: Opening Plenary GreeceBjorn Gruning

09:00 CEST

Welcome GreeceAnika Erxleben • Bjorn Gruning

09:10 CEST

Invited Talk: Evolution of X chromosome recognition during Drosophila Dosage Compensation GreeceClaudia Isabelle Keller Valsecchi

09:40 CEST

Galaxy Australia – inside the national vision of a data commons GreeceGareth Price

10:00 CEST

A Machine Learning Tool Suite for Galaxy GreeceJeremy Goecks

10:20 CEST

An Update on Galaxy Workflows: More Accessible, Expressive, Robust, and Scalable GreeceJohn Chilton • Marius van den Beek

10:59 CEST

Session 2: Administration & Development GreeceHelena Rasche

11:00 CEST

GalaxyCloudRunner: Streamlined Cloud Bursting for Galaxy GreeceNuwan Goonasekera

11:07 CEST

Laniakea: A Galaxy-on-demand Provider Platform Through Cloud Technologies GreeceMarco Antonio Tangaro

11:27 CEST

Enabling Single Sign-On for Multiple Galaxy Instances GreeceEnis Afgan

11:34 CEST

How – And How not – to manage successful local Galaxies deployments GreecePhilip Mabon

11:54 CEST

Building a Pulsar Network across Europe GreeceGianmauro Cuccuru

12:15 CEST

BoF: Using Galaxy in automated production setups ItalyPablo Moreno

13:20 CEST

How to create a Galaxy Tool GreeceJohn Chilton • Nicola Soranzo

14:50 CEST

Poster 13 A: Evaluation of tools and workflows for database construction for environmental metaproteomics KonzerthausVirginie Jouffret Poster 31 A: Development and implementation of a Galaxy instance geared towards microbiological applications within an applied public health setting Konzerthaus Poster 43 A: Galaxy and Training: 2019 updates from the Galaxy Training Network KonzerthausBérénice Batut

15:25 CEST

Demo 04 A: GalaxyCloudRunner: Streamlined Cloud Bursting for Galaxy FranceNuwan Goonasekera

15:50 CEST

Machine Learning with Galaxy - Predict age from RNA-seq dataset GermanyAlireza Khanteymoori • Jeremy Goecks • Anup Kumar

17:20 CEST

Group Picture Konzerthaus

17:29 CEST

Session 6: Outside the Genome & Community Track GermanyAnne Fouilloux

17:50 CEST

To Better Benefit from Shared Tasks in Biomedical Text Mining GermanyMouhamadou Ba

18:17 CEST

Infrastructure for Healthier Living: Galaxy at Quadram Institute Bioscience GermanyThanh Le Viet

18:24 CEST

How Usable is Galaxy? A Usability Evaluation of Galaxy GermanyNgoc-Huy Truong

19:00 CEST

The Freiburg City Tour BoF!FULL Offsite
 
Wednesday, July 3
 

08:59 CEST

Session 7: Administration & Development Track GreeceSimon Gladman

09:00 CEST

Containerizing Galaxy server as a Singularity application on HPC clusters for GenAP GreeceDavid Morais

09:40 CEST

A Minimal Docker Image for Galaxy GreeceThat Other Person

09:47 CEST

CVMFS-CSI for Galaxy: Efficient Access to Read-only Data in Kubernetes GreeceAlexandru Mahmoud

09:54 CEST

gxadmin: usegalaxy.* administration wisdom GreeceHelena Rasche

10:59 CEST

Session 8: Administration & Development Track GreeceDavid Morais

11:00 CEST

Working Effectively with Remote Data in Galaxy - A Progress Report GreeceJohn Chilton

11:07 CEST

Testing and Visualizing the State of Galaxy Tools and Workflows GreeceMartin Čech

11:27 CEST

Setting up a Galaxy Platform in a HPC Infrastructure for Genomics Implementation into Diagnosis Routines for a Health Reference Center GreeceMiguel Juliá

11:34 CEST

RealTimeTools: Integrating, Customizing, and Accessing UI-based Tools in Galaxy GreeceDaniel Blankenberg

11:54 CEST

Creating a Universe of Galaxies: The UseGalaxy.* Project GreeceNate Coraor

12:15 CEST

Arts & Crafts CzechiaSaskia Hiltemann • Helena Rasche

13:20 CEST

Train the Galaxy Trainer SpainSaskia Hiltemann • Helena Rasche • Simon Gladman • Bérénice Batut • Anna Syme

14:50 CEST

Poster 32 B: The IRIDA Platform for Microbial Genomics KonzerthausAaron Petkau

15:00 CEST

Demo 05 B: Combat-tb Workbench, A Customizable Platform For Variant Discovery And Annotation, Phylogeny Construction And Variant Prioritisation BelgiumZiphozakhe Mashologu

15:25 CEST

Demo 08 B: Tool Prediction in Galaxy Workflows using Deep Learning SpainAnup Kumar

15:50 CEST

Making your open source project awesome SpainBérénice Batut • Yo Yehudi

19:30 CEST

Conference Dinner Offsite
 
Thursday, July 4
 

08:59 CEST

Session 13: Proteomics & Metabolomics & Late Breaking Track GreeceMelanie Föll

09:00 CEST

Metaproteomics Powered By Metatranscriptomics: Towards a Multi-omic Functional Microbiome Analysis Within Galaxy GreecePratik Jagtap

09:20 CEST

Interactive Galaxy Visualizations for Multi-omics Research GreeceRay Sajulga

10:59 CEST

Session 14: Variation, Metagenomics & Assembly Track GermanySaskia Hiltemann

11:00 CEST

The IRIDA Platform for Microbial Genomics GermanyAaron Petkau

11:20 CEST

Combat-tb Workbench, A Customizable Platform For Variant Discovery And Annotation, Phylogeny Construction And Variant Prioritisation GermanyZiphozakhe Mashologu

11:27 CEST

High throughput HIV next generation sequence analysis in Galaxy GermanyDave Bouvier

11:47 CEST

NanoGalaxy: A Galaxy toolkit and workflows for long-read sequencing GermanyWillem de Koning

11:54 CEST

MITOLINK: An integrated Web-based Workflow System to Evaluate Genotype-Phenotype Correlations in Human Mitochondrial Diseases GermanyAnshu Bhardwaj

12:15 CEST

Arts & Crafts CzechiaSaskia Hiltemann • Helena Rasche

13:20 CEST

CVMFS and Pulsar GreeceSimon Gladman • Nate Coraor • Gianmauro Cuccuru • Helena Rasche

14:50 CEST

Poster 06 C: miRGalaxy: Galaxy tool for miRNA Analysis of NGS datasets (sRNA-seq) KonzerthausIlias Glogovitis Poster 30 C: Towards a platform for genomics medicine KonzerthausWolfgang Maier

15:00 CEST

Demo 10 C: Interactive Galaxy Visualizations for Multi-omics Research SpainRay Sajulga

15:50 CEST

Genomic assembly and data analysis in Galaxy with Nanopore ONT long read sequencing GreeceWillem de Koning • Saskia Hiltemann • Milad Miladi Handling integrated biological data using Python, Jupyter, and InterMine GermanyKevin Reierskog • Yo Yehudi

19:00 CEST

Intergalactic Utilities Commission (IUC) BoF OffsiteBjorn Gruning • Marius van den Beek • John Chilton • Nicola Soranzo • Saskia Hiltemann • Bérénice Batut • Daniel Blankenberg • Helena Rasche
 
Friday, July 5
 

09:00 CEST

CollaborationFest: Core Konzerthaus