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GCC2019 has ended
The 2019 Galaxy Community Conference (GCC2019) was held in Freiburg, Germany, 1-8 July.  There was one day of training, three days of mixed meeting and training, and then two to four days of CollaborationFest.  The meeting featured joint & parallel sessions; invited, accepted, and lightning talks; poster and demo sessions; birds-of-a-feather meetups; social events; and training sessions every day.

Thanks to everyone who helped make GCC2019 a success!
avatar for Beáta Scholtz

Beáta Scholtz

University of Debrecen, Faculty of Medicine, Genomics Core
associate professor
Debrecen, Hungary
Tuesday, July 2
 

08:59 CEST

Session 1: Opening Plenary GreeceBjorn Gruning

09:00 CEST

Welcome GreeceAnika Erxleben • Bjorn Gruning

09:10 CEST

Invited Talk: Evolution of X chromosome recognition during Drosophila Dosage Compensation GreeceClaudia Isabelle Keller Valsecchi

10:00 CEST

A Machine Learning Tool Suite for Galaxy GreeceJeremy Goecks

10:20 CEST

An Update on Galaxy Workflows: More Accessible, Expressive, Robust, and Scalable GreeceJohn Chilton • Marius van den Beek

11:27 CEST

Enabling Single Sign-On for Multiple Galaxy Instances GreeceEnis Afgan

11:34 CEST

How – And How not – to manage successful local Galaxies deployments GreecePhilip Mabon

12:00 CEST

Lunch Konzerthaus

13:20 CEST

16S analysis with mothur BelgiumSaskia Hiltemann ChIP-seq data analysis ItalyLeily Rabbani • Devon Ryan

14:50 CEST

Poster 07 A: Knockdown Effects of MAGOHB on Alternative Splicing Via RNA-Seq Analysis KonzerthausGlory Basumata Poster 19 A: EpiGeEC allows fast comparison of user datasets with thousands of public epigenomic datasets through Galaxy KonzerthausJonathan Laperle Poster 22 A: Laniakea: A Galaxy-on-demand Provider Platform Through Cloud Technologies KonzerthausMarco Antonio Tangaro Poster 25 A: Building a Galaxy Trusted Server to Ensure Privacy and Ownership in Genomic Research KonzerthausGuokun Zhang Poster 37 A: Galaxy Genome Annotation Project: Easier Genome Annotation Using Galaxy and GMOD Tools KonzerthausAnthony Bretaudeau Poster 43 A: Galaxy and Training: 2019 updates from the Galaxy Training Network KonzerthausBérénice Batut Session 4: Posters, Demos, and Sponsors Konzerthaus

15:50 CEST

Hi-C analysis ItalyLeily Rabbani • Joachim Wolff Variant Calling II - causative variant discovery SpainWolfgang Maier

17:20 CEST

Group Picture Konzerthaus

17:30 CEST

HiCExplorer 3: A toolbox for Hi-C data analysis GreeceJoachim Wolff Using Galaxy for Creation and Execution of Text Mining Workflows in the OpenMinTeD platform GermanyDimitrios Galanis

17:57 CEST

Analysis and visualization of the human cardiac myocyte epigenome using Galaxy GreeceRalf Gilsbach The LAPPS Grid/Galaxy Platform for Mining Scientific Publications GermanyAlexandru Mahmoud

19:00 CEST

The Galaxy Training Network BoF! OffsiteSaskia Hiltemann • Bérénice Batut • Helena Rasche
 
Wednesday, July 3
 

09:30 CEST

Single-cell RNA Analysis in Galaxy on 10X Datasets GermanyMehmet Tekman

09:50 CEST

Biology-driven classification of Single-Cells RNAseq data in Galaxy GermanyChristophe Antoniewski

11:20 CEST

Visual Refinement of Genome Annotations with Apollo in a Community Environment GermanyNathan Dunn

11:34 CEST

ChiRA: an integrated framework for Chimeric Read Annotation GermanyPavankumar Videm

11:54 CEST

Creating a Universe of Galaxies: The UseGalaxy.* Project GreeceNate Coraor Training experience on “Data analysis and interpretation for clinical genomics” using Galaxy GermanyGianmauro Cuccuru

13:20 CEST

Single cell RNA-seq analysis GermanyAlex Ostrovsky • Mehmet Tekman Train the Galaxy Trainer SpainSaskia Hiltemann • Helena Rasche • Simon Gladman • Bérénice Batut • Anna Syme

14:50 CEST

Poster 05 B: Improving Transcriptome Analysis with Molecular Indices and Galaxy KonzerthausBrad Langhorst Poster 08 B: Transposon Insertion Sequencing Analysis in Galaxy KonzerthausDelphine Lariviere Poster 23 B: Galaxy on Kubernetes: where we are and future challenges KonzerthausPablo Moreno Poster 32 B: The IRIDA Platform for Microbial Genomics KonzerthausAaron Petkau Poster 35 B: NanoGalaxy: A Galaxy toolkit and workflows for long-read sequencing KonzerthausWillem de Koning Poster 38 B: Visual Refinement of Genome Annotations with Apollo in a Community Environment KonzerthausNathan Dunn Poster 41 B: Training experience on “Data analysis and interpretation for clinical genomics” using Galaxy KonzerthausGianmauro Cuccuru Poster 50 B: Using Galaxy for Creation and Execution of Text Mining Workflows in the OpenMinTeD platform KonzerthausDimitrios Galanis

15:50 CEST

Beyond the Intro: Further Adventures in Using Galaxy ItalyMo Heydarian • Jennifer Hillman-Jackson

17:30 CEST

Invited Talk: Galaxy Community Update GreeceAnton Nekrutenko • James Taylor

18:07 CEST

Street Science Community: make science tangible & accessible by bringing it to the “street” with open science workshops GreeceTeresa Müller

19:30 CEST

Conference Dinner Offsite
 
Thursday, July 4
 

10:18 CEST

Use Galaxy, Right Now! GermanyHelena Rasche • Dave Clements

11:00 CEST

The IRIDA Platform for Microbial Genomics GermanyAaron Petkau

11:47 CEST

NanoGalaxy: A Galaxy toolkit and workflows for long-read sequencing GermanyWillem de Koning

13:20 CEST

Assembly, annotation and analysis of bacterial genomes ItalyDelphine Lariviere • Anna Syme

14:50 CEST

16: Poster, Demo, and Sponsor Session Konzerthaus Poster 06 C: miRGalaxy: Galaxy tool for miRNA Analysis of NGS datasets (sRNA-seq) KonzerthausIlias Glogovitis Poster 27 C: Galaxy on Site: Flexibility without Tears KonzerthausArthur Eschenlauer Poster 33 C: HiCExplorer 3: A toolbox for Hi-C data analysis KonzerthausJoachim Wolff Poster 42 C: Experience of Galaxy training at a biomedical institute KonzerthausMaria Doyle Poster 45 C: Galaxy-Bricks a Tool for Data Literacy and Scientific Approach Education in the Context of Citizen Science KonzerthausSimon Bénateau

15:00 CEST

Demo 12 C: Visual Refinement of Genome Annotations with Apollo in a Community Environment FranceNathan Dunn

15:25 CEST

Demo 11 C: NanoGalaxy: A Galaxy toolkit and workflows for long-read sequencing SpainWillem de Koning

15:50 CEST

Genomic assembly and data analysis in Galaxy with Nanopore ONT long read sequencing GreeceWillem de Koning • Saskia Hiltemann • Milad Miladi

17:30 CEST

Invited Talk: UseGalaxy: Elucidating chromatin biology of mouse cardiomyocytes GreeceStephan Nothjunge

18:00 CEST

Galaxy and Training: 2019 updates from the Galaxy Training Network GreeceBérénice Batut

18:20 CEST

Closing GreeceDave Clements • Bjorn Gruning • Anika Erxleben

19:00 CEST

The Freiburg City Tour BoF!FILLING Offsite