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GCC2019 has ended
The 2019 Galaxy Community Conference (GCC2019) was held in Freiburg, Germany, 1-8 July.  There was one day of training, three days of mixed meeting and training, and then two to four days of CollaborationFest.  The meeting featured joint & parallel sessions; invited, accepted, and lightning talks; poster and demo sessions; birds-of-a-feather meetups; social events; and training sessions every day.

Thanks to everyone who helped make GCC2019 a success!
avatar for Chris Barnett

Chris Barnett

University of Cape Town
Lecturer
South Africa
Monday, July 1
 

10:00 CEST

Introduction to Galaxy Administration I GreeceMartin Čech • Enis Afgan • Simon Gladman • Marius van den Beek • John Chilton • Nate Coraor • Helena Rasche

12:00 CEST

Lunch Konzerthaus

13:00 CEST

Introduction to Galaxy Administration II GreeceEnis Afgan • Simon Gladman • Martin Čech • Marius van den Beek • John Chilton • Nate Coraor • Helena Rasche

15:00 CEST

Break Konzerthaus

15:30 CEST

Analyzing Large / Complex Experimental Designs with Galaxy GermanyDaniel Blankenberg • Marius van den Beek • Mo Heydarian • Jennifer Hillman-Jackson Introduction to Galaxy Administration III GreeceEnis Afgan • Simon Gladman • Martin Čech • John Chilton • Nate Coraor • Helena Rasche

18:00 CEST

The Computational Chemistry BoF OffsiteBjorn Gruning • Chris Barnett • Simon Bray
 
Tuesday, July 2
 

08:59 CEST

Session 1: Opening Plenary GreeceBjorn Gruning

09:00 CEST

Welcome GreeceAnika Erxleben • Bjorn Gruning

09:40 CEST

Galaxy Australia – inside the national vision of a data commons GreeceGareth Price

10:20 CEST

An Update on Galaxy Workflows: More Accessible, Expressive, Robust, and Scalable GreeceJohn Chilton • Marius van den Beek

11:00 CEST

Galaxy Computational Chemistry GermanyChris Barnett

11:20 CEST

Climate Analysis with Galaxy GermanyAnne Fouilloux

11:34 CEST

How – And How not – to manage successful local Galaxies deployments GreecePhilip Mabon

11:40 CEST

Galaxy Image Analysis: Web-based microscopy image analysis and cellular phenotyping GermanyThomas Wollmann

11:54 CEST

Building a Pulsar Network across Europe GreeceGianmauro Cuccuru

13:20 CEST

How to create a Galaxy Tool GreeceJohn Chilton • Nicola Soranzo

15:00 CEST

Demo 01 A: Galaxy Computational Chemistry SpainChris Barnett

15:50 CEST

Machine Learning with Galaxy - Predict age from RNA-seq dataset GermanyAlireza Khanteymoori • Jeremy Goecks • Anup Kumar Scripting Galaxy through BioBlend GreeceMarius van den Beek • Nicola Soranzo

17:20 CEST

Group Picture Konzerthaus

17:30 CEST

Using Galaxy for Creation and Execution of Text Mining Workflows in the OpenMinTeD platform GermanyDimitrios Galanis

17:50 CEST

To Better Benefit from Shared Tasks in Biomedical Text Mining GermanyMouhamadou Ba

17:57 CEST

The LAPPS Grid/Galaxy Platform for Mining Scientific Publications GermanyAlexandru Mahmoud

19:00 CEST

The Galaxy Training Network BoF! OffsiteSaskia Hiltemann • Bérénice Batut • Helena Rasche
 
Wednesday, July 3
 

09:00 CEST

Containerizing Galaxy server as a Singularity application on HPC clusters for GenAP GreeceDavid Morais

09:40 CEST

A Minimal Docker Image for Galaxy GreeceThat Other Person

09:54 CEST

gxadmin: usegalaxy.* administration wisdom GreeceHelena Rasche

11:00 CEST

Working Effectively with Remote Data in Galaxy - A Progress Report GreeceJohn Chilton

11:07 CEST

Testing and Visualizing the State of Galaxy Tools and Workflows GreeceMartin Čech

11:34 CEST

RealTimeTools: Integrating, Customizing, and Accessing UI-based Tools in Galaxy GreeceDaniel Blankenberg

11:54 CEST

Creating a Universe of Galaxies: The UseGalaxy.* Project GreeceNate Coraor

12:15 CEST

BoF: Galactic Visualisation! ItalySaskia Hiltemann • Helena Rasche • Anil S. Thanki

13:20 CEST

Galaxy Code Architecture GreeceJohn Chilton • Nate Coraor

14:50 CEST

Poster 11 B: LC-MS/MS tool and interactive visualizations integration on Galaxy Workflow4Metabolomics infrastructure KonzerthausRomain Dallet Poster 26 B: RealTimeTools: Integrating, Customizing, and Accessing UI-based Tools in Galaxy KonzerthausDaniel Blankenberg Poster 47 B: Climate Analysis with Galaxy KonzerthausAnne Fouilloux Poster 53 B: UseGalaxy.eu: Community, Training, Infrastructure, and Users KonzerthausHelena Rasche

15:00 CEST

Demo 05 B: Combat-tb Workbench, A Customizable Platform For Variant Discovery And Annotation, Phylogeny Construction And Variant Prioritisation BelgiumZiphozakhe Mashologu Demo 15 B: CWL in Galaxy, 2019-06 snapshot ItalyMichael R. Crusoe • John Chilton • Hervé Ménager

15:50 CEST

Visualisation development in Galaxy FranceAnup Kumar • Aysam Guerler • Jeremy Goecks

17:30 CEST

Invited Talk: Galaxy Community Update GreeceAnton Nekrutenko • James Taylor

18:00 CEST

Tool Prediction in Galaxy Workflows using Deep Learning GreeceAnup Kumar

18:07 CEST

Street Science Community: make science tangible & accessible by bringing it to the “street” with open science workshops GreeceTeresa Müller

19:30 CEST

Conference Dinner Offsite
 
Thursday, July 4
 

08:59 CEST

Session 13:Outside the Genome & Community Track GermanyBérénice Batut

09:00 CEST

Invited Talk: Data visualisation by citizen science participants: the case of birds and bats monitoring schemes and Galaxy-E GermanyYves Bas • Romain Lorrillière

09:20 CEST

Interactive Galaxy Visualizations for Multi-omics Research GreeceRay Sajulga

09:30 CEST

Galaxy-Bricks a Tool for Data Literacy and Scientific Approach Education in the Context of Citizen Science GermanySimon Bénateau

09:47 CEST

Galaxy Wrapper for MaxQuant GreeceDamian Glätzer

09:54 CEST

Application of Halogen Bonding in Molecular and Drug Design Facilitated by a Galaxy Webserver GreeceFrank M. Boeckler

10:04 CEST

The ChemicalToolBox - Computational Chemistry in Galaxy GermanySimon Bray

10:11 CEST

Improved Reference Data Management in Galaxy: Towards a Plant Data Analysis Platform GermanyIgnacio Eguinoa

10:18 CEST

Use Galaxy, Right Now! GermanyHelena Rasche • Dave Clements

10:25 CEST

Galaxy Publication Library GermanyDave Clements

10:59 CEST

Session 14: Proteomics & Metabolomics GreecePratik Jagtap

11:00 CEST

Analysing and organising large-scale metabolome annotation studies with Django, ISA and Galaxy GreeceThomas N. Lawson

11:20 CEST

Combat-tb Workbench, A Customizable Platform For Variant Discovery And Annotation, Phylogeny Construction And Variant Prioritisation GermanyZiphozakhe Mashologu

11:40 CEST

Workflow4Metabolomics: an international computing infrastructure for Metabolomics GreeceMélanie Petera • Romain Dallet • Gildas Le Corguillé

12:15 CEST

Arts & Crafts CzechiaSaskia Hiltemann • Helena Rasche

13:20 CEST

CVMFS and Pulsar GreeceSimon Gladman • Nate Coraor • Gianmauro Cuccuru • Helena Rasche Proteomic data analysis with Galaxy BelgiumMatthias Fahrner • Maren Stillger • Melanie Föll

14:50 CEST

Poster 36 C: EDAM: the ontology of bioinformatics operations, types of data, topics, and data formats (2019 update) KonzerthausMatúš Kalas Poster 48 C: The ChemicalToolBox - Computational Chemistry in Galaxy KonzerthausSimon Bray

15:50 CEST

Handling integrated biological data using Python, Jupyter, and InterMine GermanyKevin Reierskog • Yo Yehudi MALDI imaging of peptides data analysis BelgiumMatthias Fahrner • Maren Stillger • Melanie Föll

17:29 CEST

Session 18: Closing Plenary GreeceAndrew Lonie

17:30 CEST

Invited Talk: UseGalaxy: Elucidating chromatin biology of mouse cardiomyocytes GreeceStephan Nothjunge

18:00 CEST

Galaxy and Training: 2019 updates from the Galaxy Training Network GreeceBérénice Batut

18:20 CEST

Closing GreeceDave Clements • Bjorn Gruning • Anika Erxleben

19:00 CEST

The Freiburg City Tour BoF!FILLING Offsite
 
Friday, July 5
 

09:00 CEST

CollaborationFest: Core Konzerthaus
 
Saturday, July 6
 

09:00 CEST

CollaborationFest: Core Konzerthaus
 
Sunday, July 7
 

09:00 CEST

CollaborationFest: Encore University of Freiburg Compute Center
 
Monday, July 8
 

09:00 CEST

CollaborationFest: Encore University of Freiburg Compute Center