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The 2019
Galaxy Community Conference (GCC2019)
was held in Freiburg, Germany, 1-8 July. There was
one day of training
,
three days of mixed meeting and training
, and then
two to four days of CollaborationFest
. The meeting featured joint & parallel sessions; invited, accepted, and lightning talks;
poster
and
demo
sessions;
birds-of-a-feather meetups
;
social events
; and training sessions every day.
Thanks to everyone who helped make GCC2019 a success!
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A. Training
All
Admin / Dev
Diverse Communities
Epigenetics
Introduction / General
Metagenomics / Assembly
Proteomics / Metabolomics
Transciptomics / Genome Variation
B. Talks: Admin / Dev
All
Session 2
Session 7
Session 8
B. Talks: Epigenetics
All
Session 6
B. Talks: General
B. Talks: Outside the Genome & Community
All
Session 13
Session 2
Session 6
B. Talks: Proteomics / Metabolomics
All
Session 13
Session 14
B. Talks: Transcriptomics / Genomics
All
Session 7
Session 8
B. Talks: Variation / Metagenomics / Assembly
All
Session 14
C. Posters / Demos / Sponsors
All
Demos
Posters
Sponsors
D. Break / Social / Networking / Meal
All
BoFs
Break
Demos
Meal
Sponsors
E. Help
F. CollaborationFest: Core
G. CollaborationFest: Encore
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← Back
The Other Enis Afgan
Johns Hopkins University
Research scientist
Pompano Beach, FL
Monday
, July 1
10:00 CEST
Introduction to Galaxy Administration I
Greece
Martin Čech • Enis Afgan • Simon Gladman • Marius van den Beek • John Chilton • Nate Coraor • Helena Rasche
13:00 CEST
Introduction to Galaxy Administration II
Greece
Enis Afgan • Simon Gladman • Martin Čech • Marius van den Beek • John Chilton • Nate Coraor • Helena Rasche
15:30 CEST
Introduction to Galaxy Administration III
Greece
Enis Afgan • Simon Gladman • Martin Čech • John Chilton • Nate Coraor • Helena Rasche
Tuesday
, July 2
10:20 CEST
An Update on Galaxy Workflows: More Accessible, Expressive, Robust, and Scalable
Greece
John Chilton • Marius van den Beek
11:00 CEST
GalaxyCloudRunner: Streamlined Cloud Bursting for Galaxy
Greece
Nuwan Goonasekera
11:27 CEST
Enabling Single Sign-On for Multiple Galaxy Instances
Greece
Enis Afgan
11:34 CEST
How – And How not – to manage successful local Galaxies deployments
Greece
Philip Mabon
11:54 CEST
Building a Pulsar Network across Europe
Greece
Gianmauro Cuccuru
12:15 CEST
BoF: Remote computation with Pulsar
France
Gianmauro Cuccuru
BoF: Using Galaxy in automated production setups
Italy
Pablo Moreno
13:20 CEST
Variant calling I - from sequenced reads to variant lists
Spain
Wolfgang Maier
15:25 CEST
Demo 02 A: Climate Analysis with Galaxy
Spain
Anne Fouilloux
Demo 04 A: GalaxyCloudRunner: Streamlined Cloud Bursting for Galaxy
France
Nuwan Goonasekera
15:50 CEST
Machine Learning with Galaxy - Predict age from RNA-seq dataset
Germany
Alireza Khanteymoori • Jeremy Goecks • Anup Kumar
17:57 CEST
The LAPPS Grid/Galaxy Platform for Mining Scientific Publications
Germany
Alexandru Mahmoud
18:24 CEST
How Usable is Galaxy? A Usability Evaluation of Galaxy
Germany
Ngoc-Huy Truong
19:00 CEST
Galaxy Runners: Tuesday Edition
Offsite
Florian Eggenhofer • Anika Erxleben
Wednesday
, July 3
09:00 CEST
Containerizing Galaxy server as a Singularity application on HPC clusters for GenAP
Greece
David Morais
09:20 CEST
Galaxy on Kubernetes: where we are and future challenges
Greece
Pablo Moreno
09:40 CEST
A Minimal Docker Image for Galaxy
Greece
That Other Person
09:47 CEST
CVMFS-CSI for Galaxy: Efficient Access to Read-only Data in Kubernetes
Greece
Alexandru Mahmoud
09:54 CEST
gxadmin: usegalaxy.* administration wisdom
Greece
Helena Rasche
10:14 CEST
Galaxy container for Hinxton Single Cell Interactive Analysis Portal (HiSciAP)
Greece
Jonathan Manning
11:00 CEST
Working Effectively with Remote Data in Galaxy - A Progress Report
Greece
John Chilton
11:07 CEST
Testing and Visualizing the State of Galaxy Tools and Workflows
Greece
Martin Čech
11:34 CEST
RealTimeTools: Integrating, Customizing, and Accessing UI-based Tools in Galaxy
Greece
Daniel Blankenberg
11:54 CEST
Creating a Universe of Galaxies: The UseGalaxy.* Project
Greece
Nate Coraor
13:20 CEST
Galaxy Code Architecture
Greece
John Chilton • Nate Coraor
15:50 CEST
Making your open source project awesome
Spain
Bérénice Batut • Yo Yehudi
Running Galaxy on Kubernetes
Greece
Pablo Moreno • That Other Person • Enis Afgan • Nuwan Goonasekera • Alexandru Mahmoud
17:30 CEST
Invited Talk: Galaxy Community Update
Greece
Anton Nekrutenko • James Taylor
18:00 CEST
Tool Prediction in Galaxy Workflows using Deep Learning
Greece
Anup Kumar
19:30 CEST
Conference Dinner
Offsite
Thursday
, July 4
09:37 CEST
CITIZEN SCIENCE PROJECT in ECOLOGY with the GALAXY-E PLATFORM
Germany
Benjamin Yguel
09:44 CEST
Galaxy-E project: 2019 news
Germany
Yvan Le Bras
10:11 CEST
Improved Reference Data Management in Galaxy: Towards a Plant Data Analysis Platform
Germany
Ignacio Eguinoa
10:18 CEST
Use Galaxy, Right Now!
Germany
Helena Rasche • Dave Clements
12:15 CEST
Galaxy containers BoF
France
Enis Afgan • Bjorn Gruning • Marius van den Beek • Nuwan Goonasekera • Pablo Moreno
13:20 CEST
CVMFS and Pulsar
Greece
Simon Gladman • Nate Coraor • Gianmauro Cuccuru • Helena Rasche
15:50 CEST
ELIXIR Galaxy AAI: Authentication and Authorisation Infrastructure
Italy
Kjetil Klepper
17:29 CEST
Session 18: Closing Plenary
Greece
Andrew Lonie
18:00 CEST
Galaxy and Training: 2019 updates from the Galaxy Training Network
Greece
Bérénice Batut
18:20 CEST
Closing
Greece
Dave Clements • Bjorn Gruning • Anika Erxleben
Timezone
GCC2019
Europe/Berlin
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A. Training
All
Admin / Dev
Diverse Communities
Epigenetics
Introduction / General
Metagenomics / Assembly
Proteomics / Metabolomics
Transciptomics / Genome Variation
B. Talks: Admin / Dev
All
Session 2
Session 7
Session 8
B. Talks: Epigenetics
All
Session 6
B. Talks: General
B. Talks: Outside the Genome & Community
All
Session 13
Session 2
Session 6
B. Talks: Proteomics / Metabolomics
All
Session 13
Session 14
B. Talks: Transcriptomics / Genomics
All
Session 7
Session 8
B. Talks: Variation / Metagenomics / Assembly
All
Session 14
C. Posters / Demos / Sponsors
All
Demos
Posters
Sponsors
D. Break / Social / Networking / Meal
All
BoFs
Break
Demos
Meal
Sponsors
E. Help
F. CollaborationFest: Core
G. CollaborationFest: Encore
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