GCC2019 has ended
The 2019 Galaxy Community Conference (GCC2019) was held in Freiburg, Germany, 1-8 July.  There was one day of training, three days of mixed meeting and training, and then two to four days of CollaborationFest.  The meeting featured joint & parallel sessions; invited, accepted, and lightning talks; poster and demo sessions; birds-of-a-feather meetups; social events; and training sessions every day.

Thanks to everyone who helped make GCC2019 a success!
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Thursday, July 4 • 15:50 - 17:20
Genomic assembly and data analysis in Galaxy with Nanopore ONT long read sequencing

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The session would cover an introduction long read sequencing with technologies like Oxford Nanopore. Followed by presenting tools in Galaxy to
  • description of best practices to perform genome assembly from long reads or hybrid long-short reads,
  • determine and plot the structure of genome
  • application use-cases such as determining antimicrobial resistance genes from the data


TIaaS URL for this training: https://usegalaxy.eu/join-training/gcc-nanopore

avatar for Saskia Hiltemann

Saskia Hiltemann

Erasmus MC
Metagenomics, Training materials, board games, CTF & security

Thursday July 4, 2019 15:50 - 17:20 CEST