GCC2019 has ended
The 2019 Galaxy Community Conference (GCC2019) was held in Freiburg, Germany, 1-8 July.  There was one day of training, three days of mixed meeting and training, and then two to four days of CollaborationFest.  The meeting featured joint & parallel sessions; invited, accepted, and lightning talks; poster and demo sessions; birds-of-a-feather meetups; social events; and training sessions every day.

Thanks to everyone who helped make GCC2019 a success!
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Tuesday, July 2 • 13:20 - 14:50
Variant calling I - from sequenced reads to variant lists

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  • What exactly is variant calling?
  • How can I use Galaxy to call variants from my (exome-, whole-genome-)sequenced samples?

Learning objectives
  • Perform simple variant calling workflows including sequencing data quality control, read mapping and variant calling
  • Learn about different variant callers available for Galaxy and their strengths and weaknesses


TIaaS URL for this training: https://usegalaxy.eu/join-training/gcc-variant-calling

avatar for Wolfgang Maier

Wolfgang Maier

Member of the Galaxy Europe team, University of Freiburg
University of Freiburg

Tuesday July 2, 2019 13:20 - 14:50 CEST