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GCC2019

The 2019 Galaxy Community Conference (GCC2019) was held in Freiburg, Germany, 1-8 July. There was one day of training, three days of mixed meeting and training, and then two to four days of CollaborationFest. The meeting featured joint & parallel sessions; invited, accepted, and lightning talks; poster and demo sessions; birds-of-a-feather meetups; social events; and training sessions every day.

Thanks to everyone who helped make GCC2019 a success!

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Variant calling I - from sequenced reads to variant lists

What exactly is variant calling?
How can I use Galaxy to call variants from my (exome-, whole-genome-)sequenced samples?

Learning objectives

Perform simple variant calling workflows including sequencing data quality control, read mapping and variant calling
Learn about different variant callers available for Galaxy and their strengths and weaknesses

Prerequisites

Introduction to Galaxy or equivalent experience
Quality Contol of HTS Data or prior exposure to HTS data
A wi-fi enabled laptop with a modern web browser. Google Chrome, Firefox and Safari will work best

TIaaS URL for this training: https://usegalaxy.eu/join-training/gcc-variant-calling

Speakers

Wolfgang Maier

Member of the Galaxy Europe team, University of Freiburg

University of Freiburg

Tuesday July 2, 2019 13:20 - 14:50 CEST
Spain

A. Training, Transciptomics / Genome Variation

Attendees (19)

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