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GCC2019
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The 2019
Galaxy Community Conference (GCC2019)
was held in Freiburg, Germany, 1-8 July. There was
one day of training
,
three days of mixed meeting and training
, and then
two to four days of CollaborationFest
. The meeting featured joint & parallel sessions; invited, accepted, and lightning talks;
poster
and
demo
sessions;
birds-of-a-feather meetups
;
social events
; and training sessions every day.
Thanks to everyone who helped make GCC2019 a success!
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Tuesday
, July 2 • 15:50 - 17:20
Variant Calling II - causative variant discovery
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Why is a simple list of variants for a sample not enough?
How can I explore called variants and compare them across samples?
How can I link variants to phenotypes, i.e., identify causative variants?
Learning objectives
Use joint variant calling to facilitate variant comparison across samples
Filter, annotate and report lists of variants
Discover variant inheritance and linkage patterns
Prerequisites
Introduction to Galaxy
or equivalent experience
Quality Contol of HTS Data
or prior exposure to HTS data
Variant calling I - from sequenced reads to variant lists
or variant calling
A wi-fi enabled laptop with a modern web browser. Google Chrome, Firefox and Safari will work best
TIaaS
URL for this training:
https://usegalaxy.eu/join-training/gcc-variant-calling
Speakers
Wolfgang Maier
Member of the Galaxy Europe team, University of Freiburg
University of Freiburg
Tuesday July 2, 2019 15:50 - 17:20 CEST
Spain
A. Training
,
Transciptomics / Genome Variation
Attendees (20)
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