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GCC2019 has ended
The 2019 Galaxy Community Conference (GCC2019) was held in Freiburg, Germany, 1-8 July.  There was one day of training, three days of mixed meeting and training, and then two to four days of CollaborationFest.  The meeting featured joint & parallel sessions; invited, accepted, and lightning talks; poster and demo sessions; birds-of-a-feather meetups; social events; and training sessions every day.

Thanks to everyone who helped make GCC2019 a success!
Tuesday, July 2 • 12:15 - 13:20
BoF: Using Galaxy in automated production setups

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While Galaxy excels at being a workflow for the biologist with no major computational knowledge, recent advances in the past 3-4 years allow its use now as a system for handling production pipelines in larger bioinformatics setups (large data providers, core facilities, etc). I would like to bring together the people that see Galaxy as a reasonable alternative to more cli oriented workflow systems in the setting of production bioinformatics, that would have an interest in using Galaxy on these environments or that are already doing it. At the EBI we piloted recently tertiary analysis single cells pipelines from Galaxy being used in our production pipelines for the Single Cell Expression Atlas. We clearly had to go through some hurdles, but we think we have now something that is relatively generic. We had to add support on the client side layer to be able to allow errors and other border conditions and elements at the server side for things like automatic resubmissions on out of memory termination, among others. It would be great to share and hear what we have all learned in our experiences in this sort of setups and what other constraints we should be aware of when trying to do this.

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avatar for Pablo Moreno

Pablo Moreno

EMBL-EBI

Tuesday July 2, 2019 12:15 - 13:20
Italy

Attendees (34)