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GCC2019
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The 2019
Galaxy Community Conference (GCC2019)
was held in Freiburg, Germany, 1-8 July. There was
one day of training
,
three days of mixed meeting and training
, and then
two to four days of CollaborationFest
. The meeting featured joint & parallel sessions; invited, accepted, and lightning talks;
poster
and
demo
sessions;
birds-of-a-feather meetups
;
social events
; and training sessions every day.
Thanks to everyone who helped make GCC2019 a success!
Schedule
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A. Training
All
Admin / Dev
Diverse Communities
Epigenetics
Introduction / General
Metagenomics / Assembly
Proteomics / Metabolomics
Transciptomics / Genome Variation
B. Talks: Admin / Dev
All
Session 2
Session 7
Session 8
B. Talks: Epigenetics
All
Session 6
B. Talks: General
B. Talks: Outside the Genome & Community
All
Session 13
Session 2
Session 6
B. Talks: Proteomics / Metabolomics
All
Session 13
Session 14
B. Talks: Transcriptomics / Genomics
All
Session 7
Session 8
B. Talks: Variation / Metagenomics / Assembly
All
Session 14
C. Posters / Demos / Sponsors
All
Demos
Posters
Sponsors
D. Break / Social / Networking / Meal
All
BoFs
Break
Demos
Meal
Sponsors
E. Help
F. CollaborationFest: Core
G. CollaborationFest: Encore
Back to Speakers
Melanie Föll
Northeastern University Boston
PostDoc
Tuesday
, July 2
09:00 CEST
Welcome
Greece
Anika Erxleben • Bjorn Gruning
09:10 CEST
Invited Talk: Evolution of X chromosome recognition during Drosophila Dosage Compensation
Greece
Claudia Isabelle Keller Valsecchi
09:40 CEST
Galaxy Australia – inside the national vision of a data commons
Greece
Gareth Price
10:00 CEST
A Machine Learning Tool Suite for Galaxy
Greece
Jeremy Goecks
10:20 CEST
An Update on Galaxy Workflows: More Accessible, Expressive, Robust, and Scalable
Greece
John Chilton • Marius van den Beek
10:59 CEST
Session 2: Outside the Genome & Community Track
Germany
Yvan Le Bras
11:00 CEST
Galaxy Computational Chemistry
Germany
Chris Barnett
11:20 CEST
Climate Analysis with Galaxy
Germany
Anne Fouilloux
11:40 CEST
Galaxy Image Analysis: Web-based microscopy image analysis and cellular phenotyping
Germany
Thomas Wollmann
13:20 CEST
Quality control of HTS data
Germany
15:50 CEST
Metatranscriptomics and multi-omics functional microbiome analysis
Belgium
Timothy J. Griffin • Bérénice Batut • Ray Sajulga • Pratik Jagtap
17:29 CEST
Session 6: Epigenetics Track & Late Breaking Lightning Talks
Greece
Devon Ryan
17:30 CEST
HiCExplorer 3: A toolbox for Hi-C data analysis
Greece
Joachim Wolff
17:50 CEST
Histone Deacetylases 1/2 In Microglia Function During Development And Neurodegeneration
Greece
Maximilian Frosch
17:57 CEST
Analysis and visualization of the human cardiac myocyte epigenome using Galaxy
Greece
Ralf Gilsbach
18:17 CEST
Late Breaking Lightning Talks
Greece
Wednesday
, July 3
08:59 CEST
Session 7: Transcriptomics & Genomics Track
Germany
Anna Syme
09:00 CEST
Invited Talk: Pou5f3, SoxB1 and Nanog control the Zygotic Genome Activation in Zebrafish by Chromatin Remodeling
Germany
Marina Veil
09:30 CEST
Single-cell RNA Analysis in Galaxy on 10X Datasets
Germany
Mehmet Tekman
09:50 CEST
Biology-driven classification of Single-Cells RNAseq data in Galaxy
Germany
Christophe Antoniewski
10:10 CEST
Improving Transcriptome Analysis with Molecular Indices and Galaxy
Germany
Brad Langhorst
10:17 CEST
Transposon Insertion Sequencing Analysis in Galaxy
Germany
Delphine Lariviere
10:59 CEST
Session 8: Transcriptomics & Genomics Track
Germany
Anshu Bhardwaj
11:00 CEST
Aequatus.js: a plugin to visualise gene trees in Galaxy
Germany
Anil S. Thanki
11:20 CEST
Visual Refinement of Genome Annotations with Apollo in a Community Environment
Germany
Nathan Dunn
11:27 CEST
Architectural and Systems Improvements to G-OnRamp, a Collaborative Eukaryotic Genome Annotation Platform
Germany
Luke Sargent
11:34 CEST
ChiRA: an integrated framework for Chimeric Read Annotation
Germany
Pavankumar Videm
11:54 CEST
Training experience on “Data analysis and interpretation for clinical genomics” using Galaxy
Germany
Gianmauro Cuccuru
12:15 CEST
BoF: Multi-omics
France
Timothy J. Griffin • Pratik Jagtap
13:20 CEST
Single cell RNA-seq analysis
Germany
Alex Ostrovsky • Mehmet Tekman
15:50 CEST
Single cell RNA-seq analysis II
Germany
Alex Ostrovsky • Mehmet Tekman
17:29 CEST
Session 12: Plenary
Greece
Frederik Coppens
17:30 CEST
Invited Talk: Galaxy Community Update
Greece
Anton Nekrutenko • James Taylor
18:00 CEST
Tool Prediction in Galaxy Workflows using Deep Learning
Greece
Anup Kumar
18:07 CEST
Street Science Community: make science tangible & accessible by bringing it to the “street” with open science workshops
Greece
Teresa Müller
Thursday
, July 4
08:59 CEST
Session 13: Proteomics & Metabolomics & Late Breaking Track
Greece
Melanie Föll
09:00 CEST
Metaproteomics Powered By Metatranscriptomics: Towards a Multi-omic Functional Microbiome Analysis Within Galaxy
Greece
Pratik Jagtap
09:20 CEST
Interactive Galaxy Visualizations for Multi-omics Research
Greece
Ray Sajulga
09:27 CEST
ProteoRE, a Galaxy-based platform for the annotation and the interpretation of proteomics data in biomedical research
Greece
Florence Combes
09:47 CEST
Galaxy Wrapper for MaxQuant
Greece
Damian Glätzer
09:54 CEST
Application of Halogen Bonding in Molecular and Drug Design Facilitated by a Galaxy Webserver
Greece
Frank M. Boeckler
10:14 CEST
Late Breaking Lightning Talks
Greece
10:59 CEST
Session 14: Proteomics & Metabolomics
Greece
Pratik Jagtap
11:00 CEST
Analysing and organising large-scale metabolome annotation studies with Django, ISA and Galaxy
Greece
Thomas N. Lawson
11:20 CEST
Reproducible and accessible analysis of spatially resolved proteomics and metabolomics data
Greece
Melanie Föll
11:40 CEST
Workflow4Metabolomics: an international computing infrastructure for Metabolomics
Greece
Mélanie Petera • Romain Dallet • Gildas Le Corguillé
12:15 CEST
BoF: Metabolomics: Tools, Resources, and Needs
Italy
Arthur Eschenlauer
17:29 CEST
Session 18: Closing Plenary
Greece
Andrew Lonie
17:30 CEST
Invited Talk: UseGalaxy: Elucidating chromatin biology of mouse cardiomyocytes
Greece
Stephan Nothjunge
18:00 CEST
Galaxy and Training: 2019 updates from the Galaxy Training Network
Greece
Bérénice Batut
18:20 CEST
Closing
Greece
Dave Clements • Bjorn Gruning • Anika Erxleben
Friday
, July 5
09:00 CEST
CollaborationFest: Core
Konzerthaus
Saturday
, July 6
09:00 CEST
CollaborationFest: Core
Konzerthaus
My Moderators Sessions
Thursday
, July 4
08:59 CEST
Session 13: Proteomics & Metabolomics & Late Breaking Track
Greece
Melanie Föll
19:00 CEST
BIKE - Lets Do It! : BoF for Galaxy Bikers (Bicycling).
Offsite
Pratik Jagtap • Melanie Föll • Magnus Palmsblad
Timezone
GCC2019
Europe/Berlin
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Freiburg, Germany
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University of Freiburg Compute Center
Filter By Type
A. Training
All
Admin / Dev
Diverse Communities
Epigenetics
Introduction / General
Metagenomics / Assembly
Proteomics / Metabolomics
Transciptomics / Genome Variation
B. Talks: Admin / Dev
All
Session 2
Session 7
Session 8
B. Talks: Epigenetics
All
Session 6
B. Talks: General
B. Talks: Outside the Genome & Community
All
Session 13
Session 2
Session 6
B. Talks: Proteomics / Metabolomics
All
Session 13
Session 14
B. Talks: Transcriptomics / Genomics
All
Session 7
Session 8
B. Talks: Variation / Metagenomics / Assembly
All
Session 14
C. Posters / Demos / Sponsors
All
Demos
Posters
Sponsors
D. Break / Social / Networking / Meal
All
BoFs
Break
Demos
Meal
Sponsors
E. Help
F. CollaborationFest: Core
G. CollaborationFest: Encore
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