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GCC2019 has ended
The 2019 Galaxy Community Conference (GCC2019) was held in Freiburg, Germany, 1-8 July.  There was one day of training, three days of mixed meeting and training, and then two to four days of CollaborationFest.  The meeting featured joint & parallel sessions; invited, accepted, and lightning talks; poster and demo sessions; birds-of-a-feather meetups; social events; and training sessions every day.

Thanks to everyone who helped make GCC2019 a success!
avatar for Melanie Föll

Melanie Föll

University of Freiburg
PhD student
Tuesday, July 2
 

09:00

Welcome GreeceAnika Erxleben • Björn Grüning

09:10

Invited Talk: Evolution of X chromosome recognition during Drosophila Dosage Compensation GreeceClaudia Isabelle Keller Valsecchi

09:40

Galaxy Australia – inside the national vision of a data commons GreeceGareth Price

10:00

A Machine Learning Tool Suite for Galaxy GreeceJeremy Goecks

10:20

An Update on Galaxy Workflows: More Accessible, Expressive, Robust, and Scalable GreeceJohn Chilton • Marius van den Beek

10:59

Session 2: Outside the Genome & Community Track GermanyYvan Le Bras

11:00

Galaxy Computational Chemistry GermanyChris Barnett

11:20

Climate Analysis with Galaxy GermanyAnne Fouilloux

11:40

Galaxy Image Analysis: Web-based microscopy image analysis and cellular phenotyping GermanyThomas Wollmann

13:20

Quality control of HTS data Germany

15:50

Metatranscriptomics and multi-omics functional microbiome analysis BelgiumTim Griffin • Bérénice Batut • Ray Sajulga • Pratik Jagtap

17:29

Session 6: Epigenetics Track & Late Breaking Lightning Talks GreeceDevon Ryan

17:30

HiCExplorer 3: A toolbox for Hi-C data analysis GreeceJoachim Wolff

17:50

Histone Deacetylases 1/2 In Microglia Function During Development And Neurodegeneration GreeceMaximilian Frosch

17:57

Analysis and visualization of the human cardiac myocyte epigenome using Galaxy GreeceRalf Gilsbach

18:17

Late Breaking Lightning Talks Greece
 
Wednesday, July 3
 

08:59

Session 7: Transcriptomics & Genomics Track GermanyAnna Syme

09:00

Invited Talk: Pou5f3, SoxB1 and Nanog control the Zygotic Genome Activation in Zebrafish by Chromatin Remodeling GermanyMarina Veil

09:30

Single-cell RNA Analysis in Galaxy on 10X Datasets GermanyMehmet Tekman

09:50

Biology-driven classification of Single-Cells RNAseq data in Galaxy GermanyChristophe Antoniewski

10:10

Improving Transcriptome Analysis with Molecular Indices and Galaxy GermanyBradley W. Langhorst

10:17

Transposon Insertion Sequencing Analysis in Galaxy GermanyDelphine Lariviere

10:59

Session 8: Transcriptomics & Genomics Track GermanyAnshu Bhardwaj

11:00

Aequatus.js: a plugin to visualise gene trees in Galaxy GermanyAnil S. Thanki

11:20

Visual Refinement of Genome Annotations with Apollo in a Community Environment GermanyNathan Dunn

11:27

Architectural and Systems Improvements to G-OnRamp, a Collaborative Eukaryotic Genome Annotation Platform GermanyLuke Sargent

11:34

ChiRA: an integrated framework for Chimeric Read Annotation GermanyPavankumar Videm

11:54

Training experience on “Data analysis and interpretation for clinical genomics” using Galaxy GermanyGianmauro Cuccuru

12:15

BoF: Multi-omics FranceTim Griffin • Pratik Jagtap

13:20

Single cell RNA-seq analysis GermanyAlex Ostrovsky • Mehmet Tekman

15:50

Single cell RNA-seq analysis II GermanyAlex Ostrovsky • Mehmet Tekman

17:29

Session 12: Plenary GreeceFrederik Coppens

17:30

Invited Talk: Galaxy Community Update GreeceAnton Nekrutenko • James Taylor

18:00

Tool Prediction in Galaxy Workflows using Deep Learning GreeceAnup Kumar

18:07

Street Science Community: make science tangible & accessible by bringing it to the “street” with open science workshops GreeceTeresa Müller
 
Thursday, July 4
 

08:59

Session 13: Proteomics & Metabolomics & Late Breaking Track GreeceMelanie Föll

09:00

Metaproteomics Powered By Metatranscriptomics: Towards a Multi-omic Functional Microbiome Analysis Within Galaxy GreecePratik Jagtap

09:20

Interactive Galaxy Visualizations for Multi-omics Research GreeceRay Sajulga

09:27

ProteoRE, a Galaxy-based platform for the annotation and the interpretation of proteomics data in biomedical research GreeceFlorence Combes

09:47

Galaxy Wrapper for MaxQuant GreeceDamian Glätzer

09:54

Application of Halogen Bonding in Molecular and Drug Design Facilitated by a Galaxy Webserver GreeceFrank M. Boeckler

10:14

Late Breaking Lightning Talks Greece

10:59

Session 14: Proteomics & Metabolomics GreecePratik Jagtap

11:00

Analysing and organising large-scale metabolome annotation studies with Django, ISA and Galaxy GreeceThomas N. Lawson

11:20

Reproducible and accessible analysis of spatially resolved proteomics and metabolomics data GreeceMelanie Föll

11:40

Workflow4Metabolomics: an international computing infrastructure for Metabolomics GreeceMélanie Petera • Romain Dallet • Gildas Le Corguillé

12:15

BoF: Metabolomics: Tools, Resources, and Needs ItalyArthur Eschenlauer

17:29

Session 18: Closing Plenary GreeceAndrew Lonie

17:30

Invited Talk: UseGalaxy: Elucidating chromatin biology of mouse cardiomyocytes GreeceStephan Nothjunge

18:00

Galaxy and Training: 2019 updates from the Galaxy Training Network GreeceBérénice Batut

18:20

Closing GreeceDave Clements • Björn Grüning • Anika Erxleben
 
Friday, July 5
 

09:00

CollaborationFest: Core Konzerthaus
 
Saturday, July 6
 

09:00

CollaborationFest: Core Konzerthaus
 

My Moderators Sessions

Thursday, July 4
 

08:59

Session 13: Proteomics & Metabolomics & Late Breaking Track GreeceMelanie Föll

19:00

BIKE - Lets Do It! : BoF for Galaxy Bikers (Bicycling). OffsitePratik Jagtap • Melanie Föll • Magnus Palmsblad