GCC2019

Introduction to Using Galaxy (Galaxy 101) 10:00 - 12:00

Beyond the Intro: Further Adventures in Using Galaxy 13:00 - 15:00

Analyzing Large / Complex Experimental Designs with Galaxy 15:30 - 17:30

Introduction to Galaxy Administration I 10:00 - 12:00

Introduction to Galaxy Administration II 13:00 - 15:00

Introduction to Galaxy Administration III 15:30 - 17:30

Nanopore Loading Zone! 09:00 - 18:00

Beer Decoded, Here and Now! 09:00 - 18:00

Lunch 12:00 - 13:00

Break 15:00 - 15:30

Birds-of-a-Feather (BoFs), with Your Dinner! 18:00 - 20:00

Genome Annotation BoF 18:00 - 20:00

BOF: Single Cell 18:00 - 20:00

The Computational Chemistry BoF 18:00 - 20:00

16S analysis with mothur 13:20 - 14:50

Metatranscriptomics and multi-omics functional microbiome analysis 15:50 - 17:20

Arts & Crafts 12:15 - 13:20

BoF: Remote computation with Pulsar 12:15 - 13:20

EWAS data analysis for population epigenetics integrated into Galaxy - Epigenetics 13:20 - 14:50

Demo 03 A: Analysi...

Demo 04 A: GalaxyC...

Session 2: Outside the Genome & Community Track 10:59 - 12:00

Galaxy Computation...

Climate Analysis w...

Galaxy Image Analy...

Quality control of HTS data 13:20 - 14:50

Machine Learning with Galaxy - Predict age from RNA-seq dataset 15:50 - 17:20

Session 6: Outside the Genome & Community Track 17:29 - 18:30

Using Galaxy for C...

To Better Benefit...

The LAPPS Grid/Gal...

Infrastructure for...

How Usable is Gala...

Session 2: Administration & Development 10:59 - 12:00

GalaxyCloudRunner:...

Laniakea: A Galaxy...

Enabling Single Si...

How – And How not...

Building a Pulsar...

How to create a Galaxy Tool 13:20 - 14:50

Scripting Galaxy through BioBlend 15:50 - 17:20

Session 6: Epigenetics Track & Late Breaking Lightning Talks 17:29 - 18:30

HiCExplorer 3: A t...

Histone Deacetylas...

Analysis and visua...

Late Breaking Ligh...

Training Infrastru...

BoF: Using Galaxy in automated production setups 12:15 - 13:20

ChIP-seq data analysis 13:20 - 14:50

Hi-C analysis 15:50 - 17:20

Break / Sponsors 10:30 - 11:00

Lunch 12:00 - 13:20

Birds-of-a-Feather (BoFs), with Lunch 12:15 - 13:20

Poster 19 A: EpiGeEC allows fast comparison of user datasets wit... 14:50 - 15:50

Poster 49 A: Mining hot topics in stem cells by combining text m... 14:50 - 15:50

Poster 25 A: Building a Galaxy Trusted Server to Ensure Privacy... 14:50 - 15:50

Poster 13 A: Evaluation of tools and workflows for database cons... 14:50 - 15:50

Poster 31 A: Development and implementation of a Galaxy instance... 14:50 - 15:50

Poster 16 A: Predicting Gene Expression from Histone Modificatio... 14:50 - 15:50

Poster 34 A: A Newly Opened Galaxy Platform at Clermont Auvergne... 14:50 - 15:50

Poster 40 A: Aequatus.js: a plugin to visualise gene trees in Ga... 14:50 - 15:50

Poster 10 A: Dima: Data-driven recommendation for a high-perform... 14:50 - 15:50

Session 4: Posters, Demos, and Sponsors 14:50 - 15:50

Poster 52 A: Poster: Science Data Center BioDATEN in relation to... 14:50 - 15:50

Poster 46 A: Galaxy-E project: 2019 news 14:50 - 15:50

Poster 37 A: Galaxy Genome Annotation Project: Easier Genome Ann... 14:50 - 15:50

Poster 43 A: Galaxy and Training: 2019 updates from the Galaxy T... 14:50 - 15:50

Poster 07 A: Knockdown Effects of MAGOHB on Alternative Splicing... 14:50 - 15:50

Poster 28 A: InteractoMIX integration in Galaxy 14:50 - 15:50

Poster 04 A: Gene Expression Analysis of In vitro Anti-filarial... 14:50 - 15:50

Poster 01 A: Alternative Splicing Analysis: The Silencing of the... 14:50 - 15:50

Poster 22 A: Laniakea: A Galaxy-on-demand Provider Platform Thro... 14:50 - 15:50

Galaxy Runners: Tuesday Edition 19:00 - 20:00

Birds-of-a-Feather (BoFs), with Your Dinner! 19:00 - 21:00

The Freiburg City Tour BoF! 19:00 - 21:00

The Galaxy Training Network BoF! 19:00 - 21:00

BOF: Galaxy Workflow Discovery (IWC) 12:15 - 13:20

Variant calling I - from sequenced reads to variant lists 13:20 - 14:50

Demo 01 A: Galaxy...

Demo 02 A: Climate...

Variant Calling II - causative variant discovery 15:50 - 17:20

Demo 05 B: Combat-...

Demo 06 B: ProteoR...

Arts & Crafts 12:15 - 13:20

BoF: Multi-omics 12:15 - 13:20

The RNA workbench, best practices for RNA and high-throughput sequencing bioinformatics in Galax... 13:20 - 14:50

Visualisation development in Galaxy 15:50 - 17:20

Session 7: Transcriptomics & Genomics Track 08:59 - 10:30

Invited Talk: Pou5f3, SoxB1 and... 09:00 - 09:30

Single-cell RNA An...

Biology-driven cla...

Improving Transcri...

Transposon Inserti...

Session 8: Transcriptomics & Genomics Track 10:59 - 12:00

Aequatus.js: a plu...

Visual Refinement...

Architectural and...

ChiRA: an integrat...

Training experienc...

Single cell RNA-seq analysis 13:20 - 14:50

Single cell RNA-seq analysis II 15:50 - 17:20

Session 7: Administration & Development Track 08:59 - 10:30

Containerizing Gal...

Galaxy on Kubernet...

A Minimal Docker I...

CVMFS-CSI for Gala...

gxadmin: usegalaxy...

Galaxy container f...

Session 8: Administration & Development Track 10:59 - 12:00

Working Effectivel...

Testing and Visual...

Setting up a Galax...

RealTimeTools: Int...

Creating a Univers...

Galaxy Code Architecture 13:20 - 14:50

Running Galaxy on Kubernetes 15:50 - 17:20

BoF: Galactic Visualisation! 12:15 - 13:20

Visualization of HTS Data in Galaxy 13:20 - 14:50

Demo 15 B: CWL in...

Beyond the Intro: Further Adventures in Using Galaxy 15:50 - 17:20

Break / Sponsors 10:30 - 11:00

Lunch 12:00 - 13:20

Birds-of-a-Feather (BoFs), with Lunch 12:15 - 13:20

Poster 14 B: Modul...

Poster 20 B: Testing and Visualizing the State of Galaxy Tools a... 14:50 - 15:50

Poster 53 B: UseGalaxy.eu: Community, Training, Infrastructure,... 14:50 - 15:50

Poster 08 B: Transposon Insertion Sequencing Analysis in Galaxy 14:50 - 15:50

Poster 50 B: Using Galaxy for Creation and Execution of Text Min... 14:50 - 15:50

Poster 35 B: NanoGalaxy: A Galaxy toolkit and workflows for long... 14:50 - 15:50

Poster 11 B: LC-MS/MS tool and interactive visualizations integr... 14:50 - 15:50

Poster 23 B: Galaxy on Kubernetes: where we are and future chall... 14:50 - 15:50

Poster 47 B: Climate Analysis with Galaxy 14:50 - 15:50

Poster 26 B: RealTimeTools: Integrating, Customizing, and Access... 14:50 - 15:50

Session 10: Posters, Demos, and Sponsors 14:50 - 15:50

Poster 29 B: ARIAWeb: a new web service for automated NMR struct... 14:50 - 15:50

Poster 02 B: Galaxy container for Hinxton Single Cell Interactiv... 14:50 - 15:50

Poster 38 B: Visual Refinement of Genome Annotations with Apollo... 14:50 - 15:50

Poster 44 B: A brief overview on how bilille is using Galaxy for... 14:50 - 15:50

Poster 05 B: Improving Transcriptome Analysis with Molecular Ind... 14:50 - 15:50

Poster 17 B: Analysis and visualization of the human cardiac myo... 14:50 - 15:50

Poster 41 B: Training experience on “Data analysis and interpret... 14:50 - 15:50

Poster 32 B: The IRIDA Platform for Microbial Genomics 14:50 - 15:50

Conference Dinner

EOSC-Life roadmap BOF 12:15 - 13:20

Train the Galaxy Trainer 13:20 - 14:50

Demo 07 B: Knockdo...

Demo 08 B: Tool Pr...

Making your open source project awesome 15:50 - 17:20

BoF: Text Mining / NLP 12:15 - 13:20

Proteomic data analysis with Galaxy 13:20 - 14:50

Demo 14 C: Galaxy...

MALDI imaging of peptides data analysis 15:50 - 17:20

Arts & Crafts 12:15 - 13:20

Galaxy containers BoF 12:15 - 13:20

Metabolomics data analysis I 13:20 - 14:50

Demo 12 C: Visual...

Demo 13 C: The IRI...

Metabolomics data analysis II 15:50 - 17:20

Session 13:Outside the Genome & Community Track 08:59 - 10:30

Invited Talk: Data visualisation... 09:00 - 09:30

Galaxy-Bricks a To...

CITIZEN SCIENCE PR...

Galaxy-E project:...

The ChemicalToolBo...

Improved Reference...

Use Galaxy, Right...

Galaxy Publication...

Session 14: Variation, Metagenomics & Assembly Track 10:59 - 12:00

The IRIDA Platform...

Combat-tb Workbenc...

High throughput HI...

NanoGalaxy: A Gala...

MITOLINK: An integ...

Machine Learning with Galaxy - Predict age from DNA-methylation dataset 13:20 - 14:50

Handling integrated biological data using Python, Jupyter, and InterMine 15:50 - 17:20

Session 13: Proteomics & Metabolomics & Late Breaking Track 08:59 - 10:30

Metaproteomics Pow...

Interactive Galaxy...

ProteoRE, a Galaxy...

Galaxy Wrapper for...

Application of Hal...

Rootless Galaxy Do...

Late Breaking Ligh...

CFSAN GalaxyTrakr

Session 14: Proteomics & Metabolomics 10:59 - 12:00

Analysing and orga...

Reproducible and a...

Workflow4Metabolom...

CVMFS and Pulsar 13:20 - 14:50

Genomic assembly and data analysis in Galaxy with Nanopore ONT long read sequencing 15:50 - 17:20

BoF: Metabolomics: Tools, Resources, and Needs 12:15 - 13:20

Assembly, annotation and analysis of bacterial genomes 13:20 - 14:50

Lunch 12:00 - 13:20

Birds-of-a-Feather (BoFs), with Lunch 12:15 - 13:20

Poster 51 C: How Usable is Galaxy? A Usability Evaluation of Gal... 14:50 - 15:50

Poster 21 C: Improved Reference Data Management in Galaxy: Towar... 14:50 - 15:50

Poster 03 C: Galaxy in fields, gardens and greenhouses for bette... 14:50 - 15:50

16: Poster, Demo, and Sponsor Session 14:50 - 15:50

Poster 48 C: The ChemicalToolBox - Computational Chemistry in Ga... 14:50 - 15:50

Poster 33 C: HiCExplorer 3: A toolbox for Hi-C data analysis 14:50 - 15:50

Poster 36 C: EDAM: the ontology of bioinformatics operations, ty... 14:50 - 15:50

Poster 54 C: TrackFind: FAIR Search of Genomic Tracks 14:50 - 15:50

Poster 09 C: Development and Deployment of a Workflow for the Ge... 14:50 - 15:50

Poster 45 C: Galaxy-Bricks a Tool for Data Literacy and Scientif... 14:50 - 15:50

Poster 27 C: Galaxy on Site: Flexibility without Tears 14:50 - 15:50

Poster 42 C: Experience of Galaxy training at a biomedical insti... 14:50 - 15:50

Poster 39 C: Deployment of Genome Databases for Algae Using Gala... 14:50 - 15:50

Poster 30 C: Towards a platform for genomics medicine 14:50 - 15:50

Poster 18 C: Applying new model for predicting effects of gene v... 14:50 - 15:50

Poster 15 C: A new Galaxy Wrapper for MaxQuant 14:50 - 15:50

Poster 12 C: Reproducible and accessible analysis of spatially r... 14:50 - 15:50

Poster 06 C: miRGalaxy: Galaxy tool for miRNA Analysis of NGS da... 14:50 - 15:50

Poster 24: Galaxy In A Large Scale Production Environment 14:50 - 15:50

BIKE - Lets Do It! : BoF for Galaxy Bikers (Bicycling). 19:00 - 20:30

Galaxy Runners: Thursday Edition 19:00 - 20:30

Birds-of-a-Feather (BoFs), with Your Dinner! 19:00 - 21:00

Intergalactic Utilities Commission (IUC) BoF 19:00 - 21:00

The Freiburg City Tour BoF! 19:00 - 21:00

Import, handle, visualize and analyze biodiversity data in Galaxy 13:20 - 14:50

Demo 10 C: Interac...

Demo 11 C: NanoGal...

Population genomics with RADseq 15:50 - 17:20