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GCC2019 has ended
The 2019 Galaxy Community Conference (GCC2019) was held in Freiburg, Germany, 1-8 July.  There was one day of training, three days of mixed meeting and training, and then two to four days of CollaborationFest.  The meeting featured joint & parallel sessions; invited, accepted, and lightning talks; poster and demo sessions; birds-of-a-feather meetups; social events; and training sessions every day.

Thanks to everyone who helped make GCC2019 a success!
avatar for Brad Langhorst

Brad Langhorst

NEB
Developmenet Group Leader
Massachusetts, USA

My Friends

  • avatar for Bérénice Batut
  • avatar for Yvan Le Bras
  • avatar for Saskia Hiltemann



Monday, July 1
 

15:30 CEST

Analyzing Large / Complex Experimental Designs with Galaxy GermanyDaniel Blankenberg • Marius van den Beek • Mo Heydarian • Jennifer Hillman-Jackson
 
Tuesday, July 2
 

09:10 CEST

Invited Talk: Evolution of X chromosome recognition during Drosophila Dosage Compensation GreeceClaudia Isabelle Keller Valsecchi

09:40 CEST

Galaxy Australia – inside the national vision of a data commons GreeceGareth Price

10:00 CEST

A Machine Learning Tool Suite for Galaxy GreeceJeremy Goecks

10:20 CEST

An Update on Galaxy Workflows: More Accessible, Expressive, Robust, and Scalable GreeceJohn Chilton • Marius van den Beek

10:59 CEST

Session 2: Administration & Development GreeceHelena Rasche

11:00 CEST

GalaxyCloudRunner: Streamlined Cloud Bursting for Galaxy GreeceNuwan Goonasekera

11:07 CEST

Laniakea: A Galaxy-on-demand Provider Platform Through Cloud Technologies GreeceMarco Antonio Tangaro

11:34 CEST

How – And How not – to manage successful local Galaxies deployments GreecePhilip Mabon

11:54 CEST

Building a Pulsar Network across Europe GreeceGianmauro Cuccuru

12:00 CEST

Lunch Konzerthaus

12:15 CEST

BOF: Galaxy Workflow Discovery (IWC) SpainBrad Langhorst BoF: Using Galaxy in automated production setups ItalyPablo Moreno

13:20 CEST

How to create a Galaxy Tool GreeceJohn Chilton • Nicola Soranzo

15:50 CEST

Machine Learning with Galaxy - Predict age from RNA-seq dataset GermanyAlireza Khanteymoori • Jeremy Goecks • Anup Kumar Scripting Galaxy through BioBlend GreeceMarius van den Beek • Nicola Soranzo

17:29 CEST

Session 6: Epigenetics Track & Late Breaking Lightning Talks GreeceDevon Ryan

17:30 CEST

HiCExplorer 3: A toolbox for Hi-C data analysis GreeceJoachim Wolff

17:57 CEST

Analysis and visualization of the human cardiac myocyte epigenome using Galaxy GreeceRalf Gilsbach

18:24 CEST

How Usable is Galaxy? A Usability Evaluation of Galaxy GermanyNgoc-Huy Truong

19:00 CEST

The Galaxy Training Network BoF! OffsiteSaskia Hiltemann • Bérénice Batut • Helena Rasche
 
Wednesday, July 3
 

08:59 CEST

Session 7: Transcriptomics & Genomics Track GermanyAnna Syme

09:00 CEST

Containerizing Galaxy server as a Singularity application on HPC clusters for GenAP GreeceDavid Morais

09:20 CEST

Galaxy on Kubernetes: where we are and future challenges GreecePablo Moreno

09:30 CEST

Single-cell RNA Analysis in Galaxy on 10X Datasets GermanyMehmet Tekman

09:50 CEST

Biology-driven classification of Single-Cells RNAseq data in Galaxy GermanyChristophe Antoniewski

10:10 CEST

Improving Transcriptome Analysis with Molecular Indices and Galaxy GermanyBrad Langhorst

10:17 CEST

Transposon Insertion Sequencing Analysis in Galaxy GermanyDelphine Lariviere

10:30 CEST

Break / Sponsors Konzerthaus

11:00 CEST

Working Effectively with Remote Data in Galaxy - A Progress Report GreeceJohn Chilton Aequatus.js: a plugin to visualise gene trees in Galaxy GermanyAnil S. Thanki

11:07 CEST

Testing and Visualizing the State of Galaxy Tools and Workflows GreeceMartin Čech

11:27 CEST

Architectural and Systems Improvements to G-OnRamp, a Collaborative Eukaryotic Genome Annotation Platform GermanyLuke Sargent

11:34 CEST

RealTimeTools: Integrating, Customizing, and Accessing UI-based Tools in Galaxy GreeceDaniel Blankenberg ChiRA: an integrated framework for Chimeric Read Annotation GermanyPavankumar Videm

11:54 CEST

Creating a Universe of Galaxies: The UseGalaxy.* Project GreeceNate Coraor

12:15 CEST

BoF: Galactic Visualisation! ItalySaskia Hiltemann • Helena Rasche • Anil S. Thanki

13:20 CEST

Galaxy Code Architecture GreeceJohn Chilton • Nate Coraor The RNA workbench, best practices for RNA and high-throughput sequencing bioinformatics in Galaxy - RNA and transcriptomics FranceJoerg Fallmann • Florian Eggenhofer Visualization of HTS Data in Galaxy Italy

14:50 CEST

Poster 05 B: Improving Transcriptome Analysis with Molecular Indices and Galaxy KonzerthausBrad Langhorst

15:50 CEST

Running Galaxy on Kubernetes GreecePablo Moreno • That Other Person • Enis Afgan • Nuwan Goonasekera • Alexandru Mahmoud Visualisation development in Galaxy FranceAnup Kumar • Aysam Guerler • Jeremy Goecks

17:30 CEST

Invited Talk: Galaxy Community Update GreeceAnton Nekrutenko • James Taylor

18:00 CEST

Tool Prediction in Galaxy Workflows using Deep Learning GreeceAnup Kumar

18:07 CEST

Street Science Community: make science tangible & accessible by bringing it to the “street” with open science workshops GreeceTeresa Müller
 
Thursday, July 4
 

08:59 CEST

Session 13:Outside the Genome & Community Track GermanyBérénice Batut

09:00 CEST

Invited Talk: Data visualisation by citizen science participants: the case of birds and bats monitoring schemes and Galaxy-E GermanyYves Bas • Romain Lorrillière

09:30 CEST

Galaxy-Bricks a Tool for Data Literacy and Scientific Approach Education in the Context of Citizen Science GermanySimon Bénateau

09:37 CEST

CITIZEN SCIENCE PROJECT in ECOLOGY with the GALAXY-E PLATFORM GermanyBenjamin Yguel

09:44 CEST

Galaxy-E project: 2019 news GermanyYvan Le Bras

10:11 CEST

Improved Reference Data Management in Galaxy: Towards a Plant Data Analysis Platform GermanyIgnacio Eguinoa

10:18 CEST

Use Galaxy, Right Now! GermanyHelena Rasche • Dave Clements

10:25 CEST

Galaxy Publication Library GermanyDave Clements

11:00 CEST

The IRIDA Platform for Microbial Genomics GermanyAaron Petkau

11:20 CEST

Combat-tb Workbench, A Customizable Platform For Variant Discovery And Annotation, Phylogeny Construction And Variant Prioritisation GermanyZiphozakhe Mashologu

11:27 CEST

High throughput HIV next generation sequence analysis in Galaxy GermanyDave Bouvier

11:47 CEST

NanoGalaxy: A Galaxy toolkit and workflows for long-read sequencing GermanyWillem de Koning

11:54 CEST

MITOLINK: An integrated Web-based Workflow System to Evaluate Genotype-Phenotype Correlations in Human Mitochondrial Diseases GermanyAnshu Bhardwaj

13:20 CEST

CVMFS and Pulsar GreeceSimon Gladman • Nate Coraor • Gianmauro Cuccuru • Helena Rasche Machine Learning with Galaxy - Predict age from DNA-methylation dataset GermanyAlireza Khanteymoori • Anup Kumar

14:50 CEST

Poster 06 C: miRGalaxy: Galaxy tool for miRNA Analysis of NGS datasets (sRNA-seq) KonzerthausIlias Glogovitis Poster 09 C: Development and Deployment of a Workflow for the Genomic Analysis of Campylobacter Jejuni KonzerthausJosé Antonio Barbero Aparicio Poster 15 C: A new Galaxy Wrapper for MaxQuant KonzerthausDamian Glätzer Poster 42 C: Experience of Galaxy training at a biomedical institute KonzerthausMaria Doyle Poster 45 C: Galaxy-Bricks a Tool for Data Literacy and Scientific Approach Education in the Context of Citizen Science KonzerthausSimon Bénateau Poster 51 C: How Usable is Galaxy? A Usability Evaluation of Galaxy KonzerthausNgoc-Huy Truong

15:00 CEST

Demo 14 C: Galaxy on Kubernetes BelgiumThat Other Person • Enis Afgan • Alexandru Mahmoud • Nuwan Goonasekera

15:25 CEST

Demo 11 C: NanoGalaxy: A Galaxy toolkit and workflows for long-read sequencing SpainWillem de Koning

15:50 CEST

Genomic assembly and data analysis in Galaxy with Nanopore ONT long read sequencing GreeceWillem de Koning • Saskia Hiltemann • Milad Miladi

17:30 CEST

Invited Talk: UseGalaxy: Elucidating chromatin biology of mouse cardiomyocytes GreeceStephan Nothjunge

18:00 CEST

Galaxy and Training: 2019 updates from the Galaxy Training Network GreeceBérénice Batut

19:00 CEST

Intergalactic Utilities Commission (IUC) BoF OffsiteBjorn Gruning • Marius van den Beek • John Chilton • Nicola Soranzo • Saskia Hiltemann • Bérénice Batut • Daniel Blankenberg • Helena Rasche
 
Friday, July 5
 

09:00 CEST

CollaborationFest: Core Konzerthaus
 
Saturday, July 6
 

09:00 CEST

CollaborationFest: Core Konzerthaus
 
Sunday, July 7
 

09:00 CEST

CollaborationFest: Encore University of Freiburg Compute Center
 
Monday, July 8
 

09:00 CEST

CollaborationFest: Encore University of Freiburg Compute Center
 

My Moderators Sessions

Tuesday, July 2
 

12:15 CEST

BOF: Galaxy Workflow Discovery (IWC) SpainBrad Langhorst