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GCC2019 has ended
The 2019 Galaxy Community Conference (GCC2019) was held in Freiburg, Germany, 1-8 July.  There was one day of training, three days of mixed meeting and training, and then two to four days of CollaborationFest.  The meeting featured joint & parallel sessions; invited, accepted, and lightning talks; poster and demo sessions; birds-of-a-feather meetups; social events; and training sessions every day.

Thanks to everyone who helped make GCC2019 a success!
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B. Talks: Admin / Dev [clear filter]
Wednesday, July 3
 

08:59 CEST

Session 7: Administration & Development Track
Talks (invited, accepted and lightning) about Galaxy Administration and development.
Speakers
avatar for Simon Gladman

Simon Gladman

University of Melbourne

Wednesday July 3, 2019 08:59 - 10:30 CEST
Greece
  B. Talks: Admin / Dev, Session 7

09:00 CEST

Containerizing Galaxy server as a Singularity application on HPC clusters for GenAP
→ Abstract, Slides

Michel Barrette 1, David A. L. Morais 1, Jonathan Laperle 1, Carol Gauthier 1, David Bujold 2, Kuang Chung Chen 2, Bryan Caron 2, Alain Veilleux 1, Guillaume Bourque 2, Pierre-Etienne Jacques 1

  1. Université de Sherbrooke, Sherbrooke, Quebec, Canada
  2. McGill University, Montreal, Quebec, Canada
Speakers
avatar for David Morais

GCC2019 abstract 18 pdf
Galaxy container in HPC pdf
Wednesday July 3, 2019 09:00 - 09:20 CEST
Greece
  B. Talks: Admin / Dev, Session 7

09:20 CEST

Galaxy on Kubernetes: where we are and future challenges
→ Abstract, Slides

Pablo Moreno 1, Luca Pireddu 2 , Marius van den Beek 3 , Ennis Afgan 4 , Nuwan Goonasekera 5 , Bjoern Gruening 6 , Yasset Perez-Riverol 1 , Irene Papatheodorou 1

  1. European Molecular Biology Laboratory, European Bioinformatics Institute, Cambridge, United Kingdom
  2. Distributed Computing Group, CRS4, Italy
  3. Institut Curie, PSL Research University, Paris, France
  4. Johns Hopkins University, Department of Biology, USA
  5. Melbourne Bioinformatics & EMBL Australia Bioinformatics Resource, U. of Melbourne, Australia
  6. University of Freiburg, Department of Computer Science, Freiburg, Germany
Speakers
avatar for Pablo Moreno

Pablo Moreno

EMBL-EBI European Bioinformatics Institute

GCC2019 abstract 72 pdf
S 7 A 2 galaxy k8s for gcc pdf
Wednesday July 3, 2019 09:20 - 09:40 CEST
Greece
  B. Talks: Admin / Dev, Session 7

09:40 CEST

A Minimal Docker Image for Galaxy
→ Abstract, Slides

Sergey Golitsynskiy 1 , Nuwan Goonasekera 2 , Alexandru Mahmoud 1 , Enis Afgan 1

  1. Johns Hopkins University, Baltimore, MD, USA
  2. University of Melbourne, Melbourne, VIC, AUS
Speakers
avatar for That Other Person

That Other Person

Software Engineer, Galaxy Project, Johns Hopkins University

GCC2019 abstract 50 pdf
S 7 A 3 min container talk pdf
Wednesday July 3, 2019 09:40 - 09:47 CEST
Greece
  B. Talks: Admin / Dev, Session 7

09:47 CEST

CVMFS-CSI for Galaxy: Efficient Access to Read-only Data in Kubernetes
→ Abstract, Slides 

Alexandru Mahmoud 1 , Nuwan Goonasekera 2 , Sergey Golitsynskiy 1 , Enis Afgan 1

  1. Johns Hopkins University, Baltimore, MD, USA
  2. University of Melbourne, Melbourne, VIC, AUS
Speakers
avatar for Alexandru Mahmoud

Alexandru Mahmoud

Galaxy Team, Johns Hopkins University

GCC2019 abstract 51 pdf
S 7 A 4 CVMFS CSI for Galaxy Efficient Access to Read only Data in Kubernetes pdf
Wednesday July 3, 2019 09:47 - 09:54 CEST
Greece
  B. Talks: Admin / Dev, Session 7

09:54 CEST

gxadmin: usegalaxy.* administration wisdom
→ Abstract, Slides

Helena Rasche 1, Nate Coraor 2, Simon Gladman 3

  1. Galaxy Europe, University of Freiburg, Freiburg, Germany
  2. Galaxy Project, Penn State University, University Park, Pennsylvania, United States
  3. Galaxy Australia, Melbourne Bioinformatics, University of Melbourne, Parkville, Australia
Speakers
avatar for Helena Rasche

GCC2019 abstract 35 pdf
Wednesday July 3, 2019 09:54 - 10:14 CEST
Greece
  B. Talks: Admin / Dev, Session 7

10:14 CEST

Galaxy container for Hinxton Single Cell Interactive Analysis Portal (HiSciAP)
→ Abstract, Slides 

Pablo Moreno 1*, Ni Huang 2*, Suhaib Mohammed 1, Jonathan Manning 1, Carlos Talavera-López 2, Kerstin Meyer 2, Irene Papatheodorou 1
  1. European Bioinformatics Institute, EMBL-EBI, Hinxton, UK
  2. Wellcome Trust Sanger Institute, Hinxton, UK
* Joint first author
Speakers
avatar for Jonathan Manning

Jonathan Manning

Senior Bioinformatician, EMBL-EBI
I am a senior bioinformatician in the Gene Expression group at the EBI, which runs resources such as Single Cell Expression Atlas. We're interested in finding the best ways to run production-quality workflows using resources such as Bioconda, Galaxy and (whisper it) Nextflow

GCC2019 abstract 71 pdf
S 7 A 6 presentation jmanning pdf
Wednesday July 3, 2019 10:14 - 10:34 CEST
Greece
  B. Talks: Admin / Dev, Session 7
 
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University of Freiburg Compute Center
  • A. Training
  • B. Talks: Admin / Dev
  • B. Talks: Epigenetics
  • B. Talks: General
  • B. Talks: Outside the Genome & Community
  • B. Talks: Proteomics / Metabolomics
  • B. Talks: Transcriptomics / Genomics
  • B. Talks: Variation / Metagenomics / Assembly
  • C. Posters / Demos / Sponsors
  • D. Break / Social / Networking / Meal
  • E. Help
  • F. CollaborationFest: Core
  • G. CollaborationFest: Encore