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GCC2019 has ended
The 2019 Galaxy Community Conference (GCC2019) was held in Freiburg, Germany, 1-8 July.  There was one day of training, three days of mixed meeting and training, and then two to four days of CollaborationFest.  The meeting featured joint & parallel sessions; invited, accepted, and lightning talks; poster and demo sessions; birds-of-a-feather meetups; social events; and training sessions every day.

Thanks to everyone who helped make GCC2019 a success!
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B. Talks: Proteomics / Metabolomics [clear filter]
Thursday, July 4
 

08:59 CEST

Session 13: Proteomics & Metabolomics & Late Breaking Track
Talks (invited, accepted and lightning) about proteomics and metabolomics research with Galaxy followed by late breaking lightning talks on a variety of topics.
Moderators
avatar for Melanie Föll

Melanie Föll

PostDoc, Northeastern University Boston

Thursday July 4, 2019 08:59 - 10:30 CEST
Greece
  B. Talks: Proteomics / Metabolomics, Session 13

09:00 CEST

Metaproteomics Powered By Metatranscriptomics: Towards a Multi-omic Functional Microbiome Analysis Within Galaxy
→ Abstract, Slides

Pratik Jagtap 1 , Subina Mehta 1 , Praveen Kumar 1 , Ray Sajulga 1 , Caleb Easterly 1 , Francesco Delogu 2 , Benoit Kunath 2 , Marie Crane 3 , Emma Leith 1 , James Johnson 1 , Thomas McGowan 1 , Bérénice Batut 4 , Phil Pope 2 , Magnus Arntzen 2 , Timothy Griffin 1

  1. University of Minnesota, Minneapolis, MN
  2. Faculty of Chemistry, Biotechnology and Food Science, NMBU, Ås, Norway
  3. Macalester College, Saint Paul, MN
  4. Bioinformatics Group, University of Freiburg, Freiburg, Germany
Speakers
avatar for Pratik Jagtap

Pratik Jagtap

Research Assistant Professor, University of Minnesota
Metaproteomics . DIA . Proteogenomics

GCC2019 abstract 56 pdf
S13P 1 Jagtap GCC 2019 MTMP 07042019 9AM pdf
Thursday July 4, 2019 09:00 - 09:20 CEST
Greece
  B. Talks: Proteomics / Metabolomics, Session 13

09:20 CEST

Interactive Galaxy Visualizations for Multi-omics Research
→ Abstract, Slides

Ray Sajulga 1, Praveen Kumar 1,2, Caleb Easterly 1, Subina Mehta 1, Thomas McGowan 3, James Johnson 3, Pratik Jagtap 1, Timothy J. Griffin 1

  1. Biochemistry, Molecular Biology, and Biophysics, University of Minnesota-Twin Cities, USA
  2. Bioinformatics and Computational Biology, University of Minnesota-Rochester, USA
  3. Minnesota Supercomputing Institute, University of Minnesota-Twin Cities, USA
Speakers
avatar for Ray Sajulga

Ray Sajulga

University of Minnesota

GCC2019 abstract 39 pdf
S13P 2 multi omics viz gcc 2019 rsajulga pdf
Thursday July 4, 2019 09:20 - 09:27 CEST
Greece
  B. Talks: Proteomics / Metabolomics, Session 13

09:27 CEST

ProteoRE, a Galaxy-based platform for the annotation and the interpretation of proteomics data in biomedical research
→ Abstract, Slides

Florence Combes 1, David Christiany 1,2, Nguyen Lien 1,2, Virginie Brun 1, Valentin Loux 2, Yves Vandenbrouck 1

  1. Univ Grenoble Alpes, CEA, INSERM, BGE U1038, F-38000, Grenoble, France
  2. Univ. Paris-Saclay, INRA, MAIAGE Unit, F-78352, Jouy-en-Josas, France
Speakers
FC

GCC2019 abstract 10 pdf
S13P 3 ProteoRE GCC 201907 FC last pdf
Thursday July 4, 2019 09:27 - 09:47 CEST
Greece
  B. Talks: Proteomics / Metabolomics, Session 13

09:47 CEST

Galaxy Wrapper for MaxQuant
→ Abstract, Slides

Damian Glätzer 1, Melanie Föll 3, Bettina Warscheid 1,2, Oliver Schilling 3, Friedel Drepper 1,2

  1. Faculty of Biology; Biochemistry and Functional Proteomics - University of Freiburg
  2. Signalling Research Center CIBSS - University of Freiburg
  3. Institute of Surgical Pathology; University Medical Center; Faculty of Medicine - University of Freiburg
Speakers
DG

GCC2019 abstract 75 pdf
S13P 4 MaxQuant pdf
Thursday July 4, 2019 09:47 - 09:54 CEST
Greece
  B. Talks: Proteomics / Metabolomics, Session 13

09:54 CEST

Application of Halogen Bonding in Molecular and Drug Design Facilitated by a Galaxy Webserver
→ Abstract, Slides

M. Zimmermann 1, M. Engelhardt 1, Frank M. Boeckler 1

  1. Lab for Molecular Design & Pharm. Biophysics, Chair of Medicinal Chemistry, Dept. of Pharmacy & Biochemistry, Eberhard Karls University, Tuebingen, Germany
Speakers
avatar for Frank M. Boeckler

Frank M. Boeckler

University Professor, Eberhard Karls Univerisitaet Tuebingen

GCC2019 abstract 80 pdf
S13P 5 GCC XB fmb print pdf
Thursday July 4, 2019 09:54 - 10:14 CEST
Greece
  B. Talks: Proteomics / Metabolomics, Session 13

10:14 CEST

Rootless Galaxy Docker, with Backup, for our Lab Intranet
→ Slides

Art Eschenlauer 1, Mark Esler 1, Tim Griffin 1, Adrian Hegeman 1

  1. University of Minnesota
Speakers
avatar for Arthur Eschenlauer

Arthur Eschenlauer

Researcher 5, University of Minnesota
https://experts.umn.edu/en/persons/art-eschenlauerhttps://orcid.org/0000-0002-2882-0508Art has a Ph.D. in Biochemistry and twenty years experience in the business community supporting Windows and Linux systems and software. Since his return to academia, Art has created tools and developed... Read More →

S13P 6 GCC2019 ArtE pdf
Thursday July 4, 2019 10:14 - 10:21 CEST
Greece
  B. Talks: Proteomics / Metabolomics, Session 13

10:14 CEST

Late Breaking Lightning Talks
Late breaking lightning talks.  The call for these will go out shortly before GCC2019.
Thursday July 4, 2019 10:14 - 10:28 CEST
Greece
  B. Talks: Proteomics / Metabolomics, Session 13

10:21 CEST

CFSAN GalaxyTrakr
→ Slides
Speakers
CS

S13P 7 GalaxyTrakr presentation cs pdf
Thursday July 4, 2019 10:21 - 10:28 CEST
Greece
  B. Talks: Proteomics / Metabolomics, Session 13
 
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University of Freiburg Compute Center
  • A. Training
  • B. Talks: Admin / Dev
  • B. Talks: Epigenetics
  • B. Talks: General
  • B. Talks: Outside the Genome & Community
  • B. Talks: Proteomics / Metabolomics
  • B. Talks: Transcriptomics / Genomics
  • B. Talks: Variation / Metagenomics / Assembly
  • C. Posters / Demos / Sponsors
  • D. Break / Social / Networking / Meal
  • E. Help
  • F. CollaborationFest: Core
  • G. CollaborationFest: Encore