GCC2019: Full Schedule

The 2019 Galaxy Community Conference (GCC2019) was held in Freiburg, Germany, 1-8 July. There was one day of training, three days of mixed meeting and training, and then two to four days of CollaborationFest. The meeting featured joint & parallel sessions; invited, accepted, and lightning talks; poster and demo sessions; birds-of-a-feather meetups; social events; and training sessions every day.

Thanks to everyone who helped make GCC2019 a success!

10:59 CEST

Session 14: Proteomics & Metabolomics

Talks (accepted and lightning) about proteomics and metabolomics applications in Galaxy.

Speakers

Pratik Jagtap

Research Assistant Professor, University of Minnesota

Metaproteomics . DIA . Proteogenomics

Thursday July 4, 2019 10:59 - 12:00 CEST
Greece

B. Talks: Proteomics / Metabolomics, Session 14

11:00 CEST

Analysing and organising large-scale metabolome annotation studies with Django, ISA and Galaxy

→ Abstract, Slides

Thomas N. Lawson 1, Martin R. Jones 1, Mark R. Viant 1,2, Ralf J. M. Weber 1,2

School of Biosciences, University of Birmingham, Birmingham, B15 2TT, UK
Phenome Centre Birmingham, University of Birmingham, Birmingham, B15 2TT, UK

Speakers

Thomas N. Lawson

Post doc, University of Birmingham

GCC2019 abstract 36 pdf

S14PM 1 gcc 04July2019 TL pdf

Thursday July 4, 2019 11:00 - 11:20 CEST
Greece

B. Talks: Proteomics / Metabolomics, Session 14

11:20 CEST

Reproducible and accessible analysis of spatially resolved proteomics and metabolomics data

→ Abstract, Slides

Melanie Christine Föll 1,2, Lennart Moritz 1, Thomas Wollmann 3, Maren Nicole Stillger 1,2,4, Niklas Vockert 3, Martin Werner 1,5,6,7, Peter Bronsert 1,5,6,7, Karl Rohr 3, Björn Andreas Grüning 8, Oliver Schilling 1,5,7

Institute of Surgical Pathology, Medical Center – University of Freiburg, Breisacher Straße 115a 79106 Freiburg, Germany
Faculty of Biology, University of Freiburg, Schänzlestraße 1 79104 Freiburg, Germany
Biomedical Computer Vision Group, BioQuant, IPMB, Heidelberg University, Im Neuenheimer Feld 267 69120 Heidelberg, Germany
Institute of Molecular Medicine and Cell Research, Faculty of Medicine, University of Freiburg, Stefan-Meier-Straße 17 79104 Freiburg, Germany
Faculty of Medicine - University of Freiburg, Germany
Tumorbank Comprehensive Cancer Center Freiburg, Medical Center – University of Freiburg, Germany
German Cancer Consortium (DKTK) and Cancer Research Center (DKFZ), Heidelberg, Germany
Department of Computer Science, University of Freiburg, Georges-Köhler-Allee 106 79110 Freiburg, Germany

Speakers

Melanie Föll

PostDoc, Northeastern University Boston

GCC2019 abstract 45 pdf

GCC 2019 talk pdf

Thursday July 4, 2019 11:20 - 11:40 CEST
Greece

B. Talks: Proteomics / Metabolomics, Session 14

11:40 CEST

Workflow4Metabolomics: an international computing infrastructure for Metabolomics

→ Abstract, Slides

Mélanie Pétéra 1, Romain Dallet 2, Christophe Duperier 1, Franck Giacomoni 1, Yann Guitton 3, Jean-François Martin 4, Pierrick Roger-Mele 5, Julien Saint-Vanne 3,6, Etienne Thévenot 5, Marie Tremblay-Franco 4, Gildas Le Corguillé 6

INRA, UMR 1019, PFEM, 63122, Saint Genes Champanelle, France
Institut Français de Bioinformatique, CNRS UMS 3601, rue John Von Neumann, 91403 Orsay, France
LUNAM Université, Oniris, Laboratoire d’Etude des Résidus et Contaminants dans les Aliments (LABERCA), Nantes, F-44307, France
Toxalim, Université de Toulouse, INRA, INP-ENVT, INP-EI-Purpan, Univ. Toulouse 3 Paul Sabatier, 31027 Toulouse, France
CEA, LIST, Laboratory for Data Analysis and Systems’ Intelligence (LADIS), MetaboHUB, F-91191 Gif-sur-Yvette, France
UPMC, CNRS, FR2424, ABiMS, Station Biologique, 29680, Roscoff, France

Speakers