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GCC2019 has ended
The 2019 Galaxy Community Conference (GCC2019) was held in Freiburg, Germany, 1-8 July.  There was one day of training, three days of mixed meeting and training, and then two to four days of CollaborationFest.  The meeting featured joint & parallel sessions; invited, accepted, and lightning talks; poster and demo sessions; birds-of-a-feather meetups; social events; and training sessions every day.

Thanks to everyone who helped make GCC2019 a success!
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Tuesday, July 2
 

14:50 CEST

Poster 01 A: Alternative Splicing Analysis: The Silencing of the Human Colon Oxidase Complex
→ Abstract, Poster

Beáta Scholtz 1 , Anna Orient 2,3, Miklós Geiszt 2,3

  1. Genomic Medicine and Bioinformatic Core Facility, Department of Biochemistry and Molecular Biology, Faculty of Medicine, University of Debrecen, Debrecen, Hungary
  2. Department of Physiology, Faculty of Medicine, Semmelweis University, Budapest, Hungary
  3. “Momentum” Peroxidase Enzyme Research Group of the Semmelweis University
Speakers
avatar for Beáta Scholtz

Beáta Scholtz

associate professor, University of Debrecen, Faculty of Medicine, Genomics Core

GCC2019 abstract 83 pdf
GCC2019 poster pdf
Tuesday July 2, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 04 A: Gene Expression Analysis of In vitro Anti-filarial Activity of Natural and Synthetic Sesquiterpene Lactones from the Plant Neurolaena lobata
→ Abstract, Poster

Lizzette Perez-Perez 1, Jessica R. Grant 1, Susan Haynes 1, Kevin M. Shea 2, Steven A. Williams 1

  1. Department of Biological Sciences, Smith College, Northampton, Massachusetts, United States of America
  2. Department of Chemistry, Smith College, Northampton, Massachusetts, United States of America
Speakers
LP

Lizzette Perez-Perez

Graduate Student, Smith College

GCC2019 abstract 62 pdf
Bioinformatcs poster pdf
Tuesday July 2, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 07 A: Knockdown Effects of MAGOHB on Alternative Splicing Via RNA-Seq Analysis
→ Abstract, Poster

Glory Basumata 1, Kusum K. Singh 2

  1. Department of Bioscience & Bioengineering, Indian Institute of Technology Guwahati, Assam
  2. Department of Bioscience & Bioengineering, Indian Institute of Technology Guwahati, Assam

Speakers
avatar for Glory Basumata

Glory Basumata

Graduate Student, Indian Institute of Technology Guwahati
In the RNA Binding Protein Laboratory, IIT- Guwahati I mainly focus on RNA-Seq Analysis. [Travel Fellowship Recipient for GCC2019)

GCC2019 abstract 23 pdf
Glory Basumata GCC2019Poster pdf
Tuesday July 2, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 10 A: Dima: Data-driven recommendation for a high-performing imputation algorithm
Janine Egert and Clemens Kreutz

Speakers
JE

GCC2019 abstract 92 pdf
Tuesday July 2, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 13 A: Evaluation of tools and workflows for database construction for environmental metaproteomics
Virginie Jouffret, Olivier Pible, Yannick Cogne, Sophie Ayrault and Jean Armengaud
Speakers
avatar for Virginie Jouffret

Virginie Jouffret

PhD student, CEA

GCC2019 abstract 93 pdf
Tuesday July 2, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 16 A: Predicting Gene Expression from Histone Modifications and Chronological Age by RNA-Seq Data using Galaxy Machine Learning Tools
→ Abstract, Poster (doi: 10.7490/f1000research.1117045.1)

Alireza Khanteymoori and Anup Kumar

Bioinformatics Lab, Albert-Ludwigs-Universität Freiburg, Germany
Speakers
avatar for Alireza Khanteymoori

Alireza Khanteymoori

Postdoc Researcher, University of Freiburg

GCC2019 abstract 60 pdf
GCC2019 Final Poster pdf
Tuesday July 2, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 19 A: EpiGeEC allows fast comparison of user datasets with thousands of public epigenomic datasets through Galaxy
Jonathan Laperle, Simon Hébert-Deschamps, Joanny Raby, David Bujold, David Morais, Michel Barrette, Guillaume Bourque and Pierre-Étienne Jacques

Summary

The Epigenomic Efficient Correlator (EpiGeEC) tool, aimed at efficiently performing pairwise correlate of thousands of epigenomic datasets, has been used over the last year to pre-calculate correlation matrices that are incorporated to the IHEC Data Portal (http://epigenomesportal.ca/ihec/) (Bujjold et al.). GeEC was also proven useful for some members of IHEC (Breeze et al.) to demonstrate that even if the experiemental procedures are not necessarily consistent through all projejcts, the generated datasets are still overall highly comparable since they tend to cluster based on the assay type and sample cell type, rather than on the producing consortium. Moreover, the correlation data were used to identify potentially mislabeled or problematic datasets, as part of a quality control pipeline implemented in the IHEC Data Portal.

In addition to visualizing the pre-compued correlation scores from the Data Portal, users can now also compare their own epigenomic datasets to IHEC ones using a public version of EpiGeEC recently launched. The could be useful, for instance, to help in the characterization of datasets, or as a quality control. The various features of EpiGeEC, integrated into the Galaxy framework of the Genetics and genomics Analysis Platform (GenAP, genap.ca) project, include the support of any genomic file formats (bigWig, WIG, bedGraph, BAM), the possibility to compute correlations at different metrics (e.g. Pearson Spearman), on different subsets of regions (e.g. genes, TSS, user-defined) or the complete genome, and the clustering algorithms to display the results as an annotated heatmap and/or dendrogram. We also provide a user-friendly interface facilitating the selection of the desired datasets, and we plan to offer datasets from model organisms generated by international consortia such as modENCODE as well as data downloaded from GEO/SRA and uniformly processed. We will present the design and implementation of EpiGeEC as well as a performance comparison with other tools and some of the key results obtained so far.

Speakers
JL

gcc final pdf
Tuesday July 2, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 22 A: Laniakea: A Galaxy-on-demand Provider Platform Through Cloud Technologies
→ Abstract, Poster

Marco Antonio Tangaro 1, Giacinto Donvito 2, Marica Antonacci 2, Pietro Mandreoli 3, Matteo Chiara 3, Graziano Pesole 1,4 and Federico Zambelli 1,3

  1. Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies - National Research Council (IBIOM-CNR), Bari, Italy
  2. National Institute for Nuclear Physics, Bari Section, Italy
  3. Dept. of Biosciences, University of Milan, Italy
  4. Dept. of Biosciences, Biotechnologies and Pharmacological Sciences, University of Bari “Aldo Moro”, Italy
Speakers
MA

GCC2019 abstract 19 pdf
Poster 22A Laniakea A Galaxy on demand Provider Platform Through Cloud Technologies pdf
Tuesday July 2, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 25 A: Building a Galaxy Trusted Server to Ensure Privacy and Ownership in Genomic Research
→ Abstract, Poster

Guokun Zhang 1,2, Aarif Mohamed Nazeer Batcha 1,2,  Nikolaus von Bomhard 1,  Ulrich Mansmann 1,2

  1. Department of Medical Informatics, Biometry and Epidemiology (IBE), University of Munich (LMU), Germany
  2. Medical Data Integration Center (MeDIC), Medical center of the university of Munich, Germany
Speakers
GZ

Guokun Zhang

Scientific assistant, Department of Medical Informatics, Biometry and Epidemiology, University of Munich
Department of Medical Informatics, Biometry and Epidemiology, University of Munich (IBE, LMU)

GCC2019 abstract 104 pdf
poster gcc 2019 pdf
Tuesday July 2, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 28 A: InteractoMIX integration in Galaxy
→ Abstract, Poster

Patricia Mirela Bota 1, Joaquim Aguirre-Plans 2, Baldo Oliva 2 and Narcis Fernandez-Fuentes 1

  1. UVic: Universitat de Vic - Universitat Central de Catalunya
  2. Research Programme on Biomedical Informatics, the Hospital del Mar Medical Research Institute and Pompeu Fabra University
Speakers
PM

GCC2019 abstract 81 pdf
interactoMIX pdf
Tuesday July 2, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 31 A: Development and implementation of a Galaxy instance geared towards microbiological applications within an applied public health setting
→ Abstract, Poster

Julien Van Braekel 1, Bert Bogaerts 1, Raf Winand 1, Qiang Fu 1, Sigrid C. J.De Keersmaecker 1, Nancy H. Roosens 1,Kevin Vanneste 1

  1. Transversal Activities in Applied Genomics, Sciensano, Brussels, Belgium
GCC2019 abstract 90 pdf
GCC2019 JVB KV pdf
Tuesday July 2, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 34 A: A Newly Opened Galaxy Platform at Clermont Auvergne University
→ Abstract, Poster

Nadia Goué 1,3, David Grimbichler 1,3, Pierre Peyret 2,3, Antoine Mahul 1,3

  1. Mésocentre Clermont Auvergne, Université Clermont Auvergne, 7 Avenue Blaise Pascal, 63 178 Aubière
  2. UMR454 MEDIS Microbiologie Environnement Digestif Santé, INRA Site de Theix 63 122 Saint-Genès-Champanelle, CBRV 26 Place Henri Dunant 63 001 Clermont-Ferrand
  3. Auvergne Bioinformatics platform, CBRV Faculté de Médecine & Pharmacie 28 Place Henri Dunant 63001 Clermont-Ferrand INRA Theix 63122 Saint-Genès-Champanelle
Speakers
avatar for Nadia Goué

Nadia Goué

Bioinformatics Engineer, Clermont Auvergne University
Working at the UCA Mesocenter. Recipient of the GCC2019 Fellowship.

GCC2019 abstract 82 pdf
GCC2019posterMesocentre pdf
Tuesday July 2, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 37 A: Galaxy Genome Annotation Project: Easier Genome Annotation Using Galaxy and GMOD Tools
→ Abstract, Poster (doi: 10.7490/f1000research.1116992.1)

Anthony Bretaudeau 1, Helena Rasche 2, Matéo Boudet 3, Loraine Brillet-Guéguen 4,5, Simon Gladman 6, Torsten Seemann 6 , Nathan Dunn 7, Björn Grüning 2

  1. INRA, UMR IGEPP, BIPAA/GenOuest, Campus Beaulieu, Rennes, France
  2. de.NBI, Albert Ludwigs Universität, Freiburg, Baden-Württemberg, Germany
  3. Plate-forme GenOuest, Univ Rennes, Inria, CNRS, IRISA, Rennes, France
  4. Sorbonne Université, CNRS, Integrative Biology of Marine Models (LBI2M), Station Biologique deRoscoff (SBR), 29680 Roscoff, France
  5. CNRS, Sorbonne Université, FR2424, ABiMS, Station Biologique, 29680, Roscoff, France
  6. Melbourne Bioinformatics, University of Melbourne, Australia
  7. Lawrence Berkeley National Lab, Berkeley, CA, USA
Speakers
avatar for Anthony Bretaudeau

Anthony Bretaudeau

BIPAA/GenOuest

GCC2019 abstract 94 pdf
bretaudeau anthony genouest 46001 pdf
Tuesday July 2, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 40 A: Aequatus.js: a plugin to visualise gene trees in Galaxy
→ Abstract, Poster

Anil S. Thanki 1, Nicola Soranzo 1, Wilfried Haerty 1, Robert P. Davey 1

  1. Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, UK
Speakers
avatar for Anil S. Thanki

Anil S. Thanki

Scientific Programmer, Earlham Institute

GCC2019 abstract 7 pdf
gcc2019(1) pdf
Tuesday July 2, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 43 A: Galaxy and Training: 2019 updates from the Galaxy Training Network
→ Abstract, Poster (doi: 10.7490/f1000research.1117108.1)

Bérénice Batut 1, Saskia Hiltemann 2, Helena Rasche 1, Subina Mehta 3, Pratik Jagtap 3, Praveen Kumar 3, Timothy Griffin 3, Dave Clements 4, over 100 other GTN contributors 5, Björn Grüning 1

  1. University of Freiburg, Freiburg, Germany
  2. Erasmus Medical Center, The Hague, Netherlands
  3. Galaxy-P Project, University of Minnesota, United States
  4. Galaxy Project, Johns Hopkins University, United States
  5. https://training.galaxyproject.org/training-material/hall-of-fame
Speakers
avatar for Bérénice Batut

Bérénice Batut

Post-doc, University of Freiburg

GCC2019 abstract 43 pdf
gtn poster png
Tuesday July 2, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 46 A: Galaxy-E project: 2019 news
Yvan Le Bras, Alan Amosse, Simon Benateau and Benjamin Yguel
Speakers
avatar for Yvan Le Bras

Yvan Le Bras

Research engineer, French National Museum of Natural History

GCC2019 abstract 66 pdf
Tuesday July 2, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 49 A: Mining hot topics in stem cells by combining text mining and scientometrics
→ Abstract, Poster

Zhengyin Hu, Xiaomei Wang and Rong-Qiang Zeng
Speakers
ZH
XW

GCC2019 abstract 1 pdf
Mining hot topics in stem cell by combining text mining and scientometrics 0628 1 pdf
Tuesday July 2, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 52 A: Poster: Science Data Center BioDATEN in relation to the Galaxy Community
Dirk von Suchodoletz, Jens Krüger, Jonathan Bauer and Björn Grüning
Speakers
avatar for Bjorn Gruning

Bjorn Gruning

University of Freiburg

GCC2019 abstract 105 pdf
Tuesday July 2, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Session 4: Posters, Demos, and Sponsors
Posters and demos will be presented on all three days, concurrently with the sponsor exhibits.
Tuesday July 2, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters, Demos, Sponsors

15:00 CEST

Demo 01 A: Galaxy Computational Chemistry
Tharindu Senapathi, Simon Bray, Christopher Barnett, Björn Grüning and Kevin Naidoo
Speakers
avatar for Chris Barnett

Chris Barnett

Lecturer, University of Cape Town

GCC2019 abstract 34 pdf
Tuesday July 2, 2019 15:00 - 15:20 CEST
Spain
  C. Posters / Demos / Sponsors, Demos

15:00 CEST

Demo 03 A: Analysing and organising large-scale metabolome annotation studies with Django, ISA and Galaxy
Thomas N. Lawson, Martin R. Jones, Mark R. Viant and Ralf J. M. Weber
Speakers
TN

Thomas N. Lawson

Post doc, University of Birmingham

GCC2019 abstract 36 pdf
Tuesday July 2, 2019 15:00 - 15:20 CEST
France
  C. Posters / Demos / Sponsors, Demos

15:25 CEST

Demo 02 A: Climate Analysis with Galaxy
→ Abstract, Poster (doi: 10.7490/f1000research.1116911.1)

Anne Fouilloux 1, Jean Iaquinta 1 and Kirstin Krüger 1

  1. Department of Geosciences, University of Oslo, Norway
Speakers
avatar for Anne Fouilloux

Anne Fouilloux

I am a Research Software Engineer working for the Nordic e-Infrastructure Collaboration (NeIC) and working on Galaxy climate (https://climate.usegalaxy.eu/) e.g. providing Galaxy tools for exploiting climate data, models to facilitate climate impact studies and climate modelling... Read More →

GCC2019 abstract 63 pdf
Tuesday July 2, 2019 15:25 - 15:45 CEST
Spain
  C. Posters / Demos / Sponsors, Demos

15:25 CEST

Demo 04 A: GalaxyCloudRunner: Streamlined Cloud Bursting for Galaxy
Nuwan Goonasekera, Alexandru Mahmoud and Enis Afgan
Speakers
avatar for Nuwan Goonasekera

Nuwan Goonasekera

University of Melbourne

GCC2019 abstract 74 pdf
Tuesday July 2, 2019 15:25 - 15:45 CEST
France
  C. Posters / Demos / Sponsors, Demos
 
Wednesday, July 3
 

14:50 CEST

Poster 14 B: Modulation of Nav1.5 mechanosensitivity by β1 and β3 subunits
→ Abstract, Poster

Michele Maroni, Esther Eberhardt, Jannis Koerner, Angelika Lampert and Beate Winner

Michele Maroni 1,, Jannis Koerner 2 , Juergen Schuettler 3 , Angelika Lampert 2 , Beate Winner 1 and Esther Eberhardt 1,3

  1. Department for Stem Cell Biology, Universitätsklinikum Erlangen. 
  2. Institute of Physiology, RWTH Aachen University. 
  3. Department for Anesthesiology, Universitätsklinikum Erlangen.
Speakers
MM

GCC2019 abstract 100 pdf
GCC 2019 pdf
Wednesday July 3, 2019 14:50 - 14:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 02 B: Galaxy container for Hinxton Single Cell Interactive Analysis Portal (HiSciAP)
→ Abstract, Poster

Pablo Moreno, Ni Huang, Suhaib Mohammed, Jonathan Manning, Carlos Talavera-López, Kerstin Meyer and Irene Papatheodorou
Speakers
avatar for Jonathan Manning

Jonathan Manning

Senior Bioinformatician, EMBL-EBI
I am a senior bioinformatician in the Gene Expression group at the EBI, which runs resources such as Single Cell Expression Atlas. We're interested in finding the best ways to run production-quality workflows using resources such as Bioconda, Galaxy and (whisper it) Nextflow

GCC2019 abstract 71 pdf
galaxy community conf hsciap pdf
Wednesday July 3, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 05 B: Improving Transcriptome Analysis with Molecular Indices and Galaxy
→ Abstract, Poster

Gautam Naishadham 1, Deyra N. Rodriguez 1, Keerthana Krishnan 1, Bradley W. Langhorst 1

  1. New England Biolabs
Speakers
avatar for Brad Langhorst

Brad Langhorst

Developmenet Group Leader, NEB

GCC2019 abstract 55 pdf
GCC2019 poster pdf
Wednesday July 3, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 08 B: Transposon Insertion Sequencing Analysis in Galaxy
Delphine Lariviere, Prabhani Kuruppumullage Don, Laura Wickham, Francesca Chiaromonte, Kenneth Keiler and Anton Nekrutenko
Speakers
avatar for Delphine Lariviere

Delphine Lariviere

Penn State University
Post-doc in the Galaxy Team (Nekrutenko Lab). Works on bacterial genomics, assembly, RNA Seq, TnSeq. Also interested in evolution, metagenomics, epigenetics and visualisation.

GCC2019 abstract 42 pdf
Wednesday July 3, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 11 B: LC-MS/MS tool and interactive visualizations integration on Galaxy Workflow4Metabolomics infrastructure
→ Abstract, Poster

Romain Dallet, Gildas Le Corguillé, Julien Saint-Vanne, Yann Guitton and Erwan Corre
Speakers
RD

Romain Dallet

ABiMS, IFB Core - FR2424 - CNRS - Station Biologique de Roscoff, France

GCC2019 abstract 15 pdf
Poster GCC 2019 pdf
Wednesday July 3, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 17 B: Analysis and visualization of the human cardiac myocyte epigenome using Galaxy
→ Abstract, Poster

Ralf Gilsbach1, Martin Schwaderer 1, Björn A. Grüning 2 and Lutz Hein 1

  1. Institute of Experimental and Clinical Pharmacology and Toxicology, BIOSS Centre for Biological Signaling Studies, University of Freiburg, Germany
  2. Department of Computer Science, University of Freiburg, Germany
Speakers
RG

GCC2019 abstract 61 pdf
Gilsbach GCC 2017 pdf
Wednesday July 3, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 20 B: Testing and Visualizing the State of Galaxy Tools and Workflows
Helena Rasche, Nate Coraor, Marius van den Beek, Björn Grüning, John Chilton, Martin Čech and Galaxy Team
Speakers
avatar for Martin Čech

Martin Čech

Dev and Trainer, free element
Galaxy Enthusiast

GCC2019 abstract 46 pdf
Wednesday July 3, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 23 B: Galaxy on Kubernetes: where we are and future challenges
Pablo Moreno, Luca Pireddu, Marius van den Beek, Ennis Afgan, Nuwan Goonasekera, Bjoern Gruening, Yasset Perez-Riverol and Irene Papatheodorou
Speakers
avatar for Pablo Moreno

Pablo Moreno

EMBL-EBI European Bioinformatics Institute

GCC2019 abstract 72 pdf
Wednesday July 3, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 26 B: RealTimeTools: Integrating, Customizing, and Accessing UI-based Tools in Galaxy
Daniel Blankenberg
Speakers
avatar for Daniel Blankenberg

Daniel Blankenberg

Assistant Professor, Genomic Medicine Institute, Cleveland Clinic Lerner Research Institute

GCC2019 abstract 76 pdf
Wednesday July 3, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 29 B: ARIAWeb: a new web service for automated NMR structure calculation with ARIA
Fabien Mareuil, Fabrice Allain, Herve Menager, Michael Nilges and Benjamin Bardiaux
Speakers
FM

Fabien Mareuil

Research Engineer, Institut Pasteur

GCC2019 abstract 16 pdf
Wednesday July 3, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 32 B: The IRIDA Platform for Microbial Genomics
→ Abstract, Poster

Aaron Petkau 1, Thomas Matthews 1, Franklin Bristow 2, Josh Adam 1, Jeff Thiessen 1, Sukhdeep Sidhu 1, Peter Kruczkiewicz 1, Emma Griffiths 3, Damion Dooley 4, Dan Fornika 4, Geoff Winsor 3, Amogelang R. Raphenya 5, Morag Graham 1,2, The IRIDA consortium, Eduardo Taboada 1, Andrew G. McArthur 5, Robert Beiko 6, William Hsiao 4, Fiona Brinkman 3, Gary Van Domselaar 1,2

  1. Public Health Agency of Canada, Winnipeg, Canada
  2. University of Manitoba, Winnipeg, Canada
  3. Simon Fraser University, Burnaby, Canada
  4. BC Centre for Disease Control Public Health Laboratory, Vancouver, Canada
  5. McMaster University, Hamilton,Canada6.Dalhousie University, Halifax, Canada
Speakers
avatar for Aaron Petkau

Aaron Petkau

Bioinformatician, Public Health Agency of Canada

GCC2019 abstract 38 pdf
Galaxy2019PetkauPoster pdf
Wednesday July 3, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 35 B: NanoGalaxy: A Galaxy toolkit and workflows for long-read sequencing
→ Abstract, Poster

Willem de Koning, Milad Miladi, Saskia Hiltemann and Bjoern Gruening
Speakers
avatar for Willem de Koning

GCC2019 abstract 73 pdf
Poster GCC pdf
Wednesday July 3, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 38 B: Visual Refinement of Genome Annotations with Apollo in a Community Environment
Nathan Dunn, Deepak Unni, Colin Diesh, Helena Rasche, Anthony Bretaudeau, Nomi Harris and Ian Holmes
Speakers
avatar for Nathan Dunn

Nathan Dunn

Software Developer, Lawrence Berkeley National Lab

GCC2019 abstract 14 pdf
Wednesday July 3, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 41 B: Training experience on “Data analysis and interpretation for clinical genomics” using Galaxy
→ Abstract, Poster

Gianmauro Cuccuru 1,2, Paolo Uva 2, Alessandro Bruselles 3, Giuseppe Marangi 4, TommasoPippucci 5 on behalf of the Italian Society of Human Genetics (SIGU)

  1. Albert Ludwigs University, Freiburg, Germany
  2. Centro di Ricerca, Sviluppo e Studi Superiori in Sardegna (CRS4), Pula, Cagliari, Italy
  3. Istituto Superiore di Sanità, Rome, Italy
  4. Institute of Genomic Medicine, Fondazione Policlinico Universitario A. Gemelli IRCCS, UniversitàCattolica del Sacro Cuore, Roma, Italy
  5. Sant’Orsola-Malpighi University Hospital, Bologna, Italy
Speakers
avatar for Gianmauro Cuccuru

Gianmauro Cuccuru

University of Freiburg

GCC2019 abstract 44 pdf
GCC2019 poster Clinical Genomics using Galaxy pdf
Wednesday July 3, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 44 B: A brief overview on how bilille is using Galaxy for sharing knowledge, computational resources & tools.
→ Abstract, Poster

Loïc Couderc 1, Isabelle Guigon 1, Pierre Pericard 1, Samuel Blanck 2, Florence Maurier 3,Guillemette Marot 4, Hélène Touzet 5

  1. bilille, Université de Lille, Institut Pasteur de Lille, 59655 Villeneuve d’Ascq cedex, France
  2. EA2694, Université de Lille, 59045 Lille cedex,  France
  3. Institut Pasteur de Lille, 59019 Lille cedex, France
  4. EA2694, Université de Lille and Inria, 59045 Lille cedex, France
  5. CNRS, CRIStAL, 59655 Villeneuve d’Ascq cedex, France
Speakers
LC

GCC2019 abstract 97 pdf
gcc 2019 poster pdf
Wednesday July 3, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 47 B: Climate Analysis with Galaxy
→ Abstract, Poster (doi: 10.7490/f1000research.1116911.1)

Anne Fouilloux 1, Kirstin Krüger 1, Jean Iaquinta 1

  1. Department of Geosciences, University of Oslo, Norway
Speakers
avatar for Anne Fouilloux

Anne Fouilloux

I am a Research Software Engineer working for the Nordic e-Infrastructure Collaboration (NeIC) and working on Galaxy climate (https://climate.usegalaxy.eu/) e.g. providing Galaxy tools for exploiting climate data, models to facilitate climate impact studies and climate modelling... Read More →

GCC2019 abstract 63 pdf
Wednesday July 3, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 50 B: Using Galaxy for Creation and Execution of Text Mining Workflows in the OpenMinTeD platform
→ Abstract, Poster

Dimitrios Galanis 1, PennyLabropoulou 1, Stelios Piperidis 1, Androniki Pavlidou 1, Antonis Lempesis 1 , Natalia Manola 1

  1. Athena   Research   and   Innovation   Center   in   Information,   Communication   and   Knowledge Technologies
Speakers
DG

GCC2019 abstract 37 pdf
OMTDGalaxyConference19 pdf
Wednesday July 3, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 53 B: UseGalaxy.eu: Community, Training, Infrastructure, and Users
→ Abstract, Poster

Helena Rasche 1, the European Galaxy Project

  1. Bioinformatics Group, Department of Computer Science, University of Freiburg, 79110 Freiburg im Breisgau, Germany
Speakers
avatar for Helena Rasche

GCC2019 abstract 106 pdf
GCC2019 usegalaxy.eu poster(1) pdf
Wednesday July 3, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Session 10: Posters, Demos, and Sponsors
Posters and demos will be presented on all three days, concurrently with the sponsor exhibits.
Wednesday July 3, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters, Demos, Sponsors

15:00 CEST

Demo 05 B: Combat-tb Workbench, A Customizable Platform For Variant Discovery And Annotation, Phylogeny Construction And Variant Prioritisation
Alan Christoffels, Ziphozakhe Mashologu, Peter Van Heusden and Thoba Lose
Speakers
avatar for Ziphozakhe Mashologu

Ziphozakhe Mashologu

Developer, UWC - South African National Bioinformatics Institute
South African National Bioinformatics Institute (SANBI)

GCC2019 abstract 24 pdf
Wednesday July 3, 2019 15:00 - 15:20 CEST
Belgium
  C. Posters / Demos / Sponsors, Demos

15:00 CEST

Demo 07 B: Knockdown Effects of MAGOHB on Alternative Splicing Via RNA-Seq Analysis
Glory Basumata and Kusum K Singh
Speakers
avatar for Glory Basumata

Glory Basumata

Graduate Student, Indian Institute of Technology Guwahati
In the RNA Binding Protein Laboratory, IIT- Guwahati I mainly focus on RNA-Seq Analysis. [Travel Fellowship Recipient for GCC2019)

GCC2019 abstract 23 pdf
Wednesday July 3, 2019 15:00 - 15:20 CEST
Spain
  C. Posters / Demos / Sponsors, Demos

15:00 CEST

Demo 15 B: CWL in Galaxy, 2019-06 snapshot
John Chilton 1, Hervé Ménager 2 and Michael Crusoe 3

  1. Penn State University
  2. Institut Pasteur
  3. CWL Project / ELIXIR-NL

Build the demo yourself at

https://gitlab.pasteur.fr/hmenager/galaxy-cwl-is-docker/tree/20190703#galaxy-cwl-is-docker
Speakers
avatar for Michael R. Crusoe

Michael R. Crusoe

Project Lead & Co-founder, Common Workflow Language project
Michael R. Crusoe is one of the co-founders of the CWL project and is the CWL Project Lead. His facilitation, technical contributions, and training on behalf of the project draw from his time as the former lead developer of C. Titus Brown's k-h-mer project, his previous career as... Read More →
avatar for John Chilton
avatar for Hervé Ménager

Hervé Ménager

Research Engineer, Institut Pasteur
Bioinformatics and Biostatistics Hub of the C3BI, Institut Pasteur

GCC2019 abstract 108 (1) pdf
Wednesday July 3, 2019 15:00 - 15:20 CEST
Italy
  C. Posters / Demos / Sponsors, Demos

15:25 CEST

Demo 06 B: ProteoRE, a Galaxy-based platform for the annotation and the interpretation of proteomics data in biomedical research
Florence Combes, David Christiany, Lien Nguyen, Virginie Brun, Valentin Loux and Yves Vandenbrouck
Speakers
FC

GCC2019 abstract 10 pdf
Wednesday July 3, 2019 15:25 - 15:45 CEST
Belgium
  C. Posters / Demos / Sponsors, Demos

15:25 CEST

Demo 08 B: Tool Prediction in Galaxy Workflows using Deep Learning
Galaxy workflows are scientific data processing pipelines for performing and
reproducing data analyses. The workflows are complex and difficult to create from a
suite of 2,000+ tools available in Galaxy, especially for new Galaxy users. In order to
make creating workflows easier, faster and less error-prone, a recommendation
system was developed to predict following tools. The predictive system analyses the
complete set of workflows available on Galaxy’s European server using a deep
learning approach to create a tool prediction model.

Workflows are directed acyclic graphs. To create the predictive model, sequences
(paths) of tools are extracted from these graphs and learned by a deep learning
approach ( Gated Recurrent Neural Network ). The hyperparameters of the deep
learning model are optimised using bayesian optimisation. The usage frequency of
tools is integrated in the model so that the tools which have not been used recently do
not appear in the set of possible tools. This is achieved by learning the usage of each
tool over time using a support vector regression model.

An API was developed to predict tools and visualize them using a user interface. It can
be used in the Galaxy workflow editor (It is not yet available publicly. The complete
code is located here ). The API can be also used for multiple user interface
integrations. Using the tool recommendation system, a user does not need to search
for the tools in the tool box to create a workflow. The possible tools are available in
the “recommended tools” modal popup.
Speakers
avatar for Anup Kumar

Anup Kumar

PhD candidate, University of Freiburg

GCC2019 abstract 26 pdf
Wednesday July 3, 2019 15:25 - 15:45 CEST
Spain
  C. Posters / Demos / Sponsors, Demos
 
Thursday, July 4
 

14:50 CEST

16: Poster, Demo, and Sponsor Session
Posters and demos will be presented on all three days, concurrently with the sponsor exhibits.
Thursday July 4, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters, Demos, Sponsors

14:50 CEST

Poster 03 C: Galaxy in fields, gardens and greenhouses for better seeds.
→ Abstract, Poster

Michael Faubladier 1, Frederic Sapet 2 and Camille Segard 1

  1. Bioinformatics, Limagrain Vegetables Seeds.Chappes, France
  2. Traits & Technologies, Biostatistics and Bioinformatics Team, Limagrain Field Seeds. Chappes,France
Speakers
avatar for Michael Faubladier

Michael Faubladier

Bioinformatician, Limagrain
avatar for Camille Segard

Camille Segard

Bioinformatician, Limagrain
avatar for Frederic Sapet

Frederic Sapet

Bioinformatics Research Engineer, Limagrain

GCC2019 abstract 95 pdf
GCC2019 poster v2.2 pdf
Thursday July 4, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 06 C: miRGalaxy: Galaxy tool for miRNA Analysis of NGS datasets (sRNA-seq)
Ilias Glogovitis, Galina Yahubyan and Vesselin Baev
Speakers
IG

GCC2019 abstract 58 pdf
Thursday July 4, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 09 C: Development and Deployment of a Workflow for the Genomic Analysis of Campylobacter Jejuni
→ Abstract, Poster

José Antonio Barbero Aparicio 1, José Francisco Díez Pastor 1, Beatriz Melero Gil 1, César Ignacio
García Osorio 2

  1. University of Burgos, Spain. Civil Engineering Department. Computer Languages and Systems Area.
  2. University of Burgos, Spain. Department of Biotechnology and Food Science. Food Science Area.
Speakers
JA

GCC2019 abstract 89 pdf
Poster GCC pdf
Thursday July 4, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 12 C: Reproducible and accessible analysis of spatially resolved proteomics and metabolomics data
→ Abstract, Poster

Melanie Christine Föll 1,2, Lennart Moritz 1, Thomas Wollmann 3, Maren Nicole Stillger 1,2,4, Niklas Vockert 3, Martin Werner 1,5,6,7, Peter Bronsert 1,5,6,7, Karl Rohr 3, Björn Andreas Grüning 8, Oliver Schilling 1,5,7

  1. Institute of Surgical Pathology, Medical Center –University of Freiburg, Breisacher Straße 115a 79106 Freiburg, Germany
  2. Faculty of Biology, University of Freiburg, Schänzlestraße 1 79104 Freiburg, Germany
  3. Biomedical Computer Vision Group, BioQuant, IPMB, Heidelberg University, Im Neuenheimer Feld 267 69120 Heidelberg, Germany
  4. Institute of Molecular Medicine and Cell Research, Faculty of Medicine, University of Freiburg, Stefan-Meier-Straße 17 79104 Freiburg, Germany
  5. Faculty of Medicine -University of Freiburg, Germany
  6. Tumorbank Comprehensive Cancer Center Freiburg, Medical Center –University of Freiburg, Germany
  7. German Cancer Consortium (DKTK) and Cancer Research Center (DKFZ), Heidelberg, Germany
  8. Department of Computer Science, University of Freiburg, Georges-Köhler-Allee 106 79110 Freiburg, Germany
Speakers
avatar for Melanie Föll

Melanie Föll

PostDoc, Northeastern University Boston

GCC2019 abstract 45 pdf
Poster GCC19 pdf
Thursday July 4, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 15 C: A new Galaxy Wrapper for MaxQuant
→ Abstract, Poster

Damian Glätzer 1, Melanie Föll 3, Bettina Warscheid 1,2, Oliver Schilling 3, Friedel Drepper1,2

  1. Faculty of Biology; Biochemistry and Functional Proteomics - University of Freiburg
  2. Signaling Research Center CIBSS - University of Freiburg
  3. Institute of Surgical Pathology; University Medical Center; Faculty ofMedicine - University of Freiburg
Speakers
DG

GCC2019 abstract 75 pdf
Poster 15C GCC2019 MaxQuant Galaxy 20190701 print pdf
Thursday July 4, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 18 C: Applying new model for predicting effects of gene variants in epigenetic regulators within Galaxy environment
→ Abstract, Poster

Tamara Drljača, Vladimir Perović, Radoslav Davidović, Nevena Veljković and Branislava Gemović

Laboratory for Bioinformatics and Computational Chemistry, Institute of Nuclear Sciences Vinca, University of Belgrade, Belgrade, Serbia
Speakers
TD

Tamara Drljača

Research Trainee, Institute of Nuclear Sciences VINCA
PhD student in Laboratory for Bioinformatics and Computational Chemistry, I mainly focus on genomic data analysis. Recipient of the GCC2019 Fellowship.

GCC2019 abstract 59 pdf
Poster Drljaca GCC2019 pdf
Thursday July 4, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 21 C: Improved Reference Data Management in Galaxy: Towards a Plant Data Analysis Platform
→ Abstract, Poster (doi: 10.7490/f1000research.1117086..1)

Ignacio Eguinoa 1,2, Frederik Coppens 1,2

  1. Ghent University, Department of Plant Biotechnology and Bioinformatics, 9052 Ghent, Belgium
  2. VIB Center for Plant Systems Biology, 9052 Ghent, Belgium
Speakers
IE

Ignacio Eguinoa

ELIXIR Belgium - VIB Center for Plant Systems Biology

GCC2019 abstract 17 pdf
f1000research 255486 pdf
Thursday July 4, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 24: Galaxy In A Large Scale Production Environment
Sascha Kastens 1, Yadhu Kumar 1, Matthias Neder 1

  1. Eurofins Genomics Europe Sequencing GmbH
Speakers
SK

Sascha Kastens

Bioinformation, Eurofins Genomics Europe Sequencing GmbH

GCC2019 abstract 88 pdf
Thursday July 4, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 27 C: Galaxy on Site: Flexibility without Tears
→ Abstract, Poster

Art Eschenlauer 1,2, Mark Esler 2, Tim Griffin 1, Adrian Hegeman 2

  1. Department of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota—Twin Cities.
  2. Department of Horticultural Science, University of Minnesota—Twin Cities
Speakers
avatar for Arthur Eschenlauer

Arthur Eschenlauer

Researcher 5, University of Minnesota
https://experts.umn.edu/en/persons/art-eschenlauerhttps://orcid.org/0000-0002-2882-0508Art has a Ph.D. in Biochemistry and twenty years experience in the business community supporting Windows and Linux systems and software. Since his return to academia, Art has created tools and developed... Read More →

GCC2019 abstract 86 pdf
2019 Metabolomics&GCC ArtEschenlauer tardis pdf
Thursday July 4, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 30 C: Towards a platform for genomics medicine
→ Abstract, Poster

Wolfgang Maier and Björn Grüning
Speakers
avatar for Wolfgang Maier

Wolfgang Maier

Member of the Galaxy Europe team, University of Freiburg
University of Freiburg

GCC2019 abstract 99 pdf
poster 30C pdf
Thursday July 4, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 33 C: HiCExplorer 3: A toolbox for Hi-C data analysis
→ Abstract, Poster

Joachim Wolff 1,  Leily Rabbani 2,  Gautier Richard 2 , Thomas Manke 2,  Asifa Akhtar 2, Rolf Backofen 1, Fidel Ramirez 3 , BjörnGrüning 1

  1. Bioinformatics Lab, Albert-Ludwigs-Universität Freiburg im Breisgau, Germany
  2. Max-Planck-Institut für Immunbiologie und Epigenetik, Freiburg im Breisgau, Germany
  3. Target Discovery Research, Boehringer Ingelheim Pharma GmbH & Co. KG, Biberach an der Riß,Germany
Speakers
JW

Joachim Wolff

Albert-Ludwigs-University Freiburg

GCC2019 abstract 70 pdf
hicexplorer poster (1) pdf
Thursday July 4, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 36 C: EDAM: the ontology of bioinformatics operations, types of data, topics, and data formats (2019 update)
Matúš Kalaš, Hervé Ménager, Veit Schwämmle, Jon Ison and Edam Contributors
Speakers
avatar for Matúš Kalas

Matúš Kalas

Senior Engineer, University of Bergen
Attending GCC2022 virtually 🌌Working on open science|source|society|education, EDAM ontology, ELIXIR Norway, Bio.tools, ...

GCC2019 abstract 103 pdf
Thursday July 4, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 39 C: Deployment of Genome Databases for Algae Using Galaxy Genome Annotation
→ Abstract, Poster (doi: 10.7490/f1000research.1118616.1)

Loraine Brillet-Guéguen 1,2, Delphine Nègre 2, Anthony Bretaudeau 3, Matéo Boudet 4, Helena Rasche 5, Olivier Collin 4, Erwan Corre 2

  1. Sorbonne Université, CNRS, Integrative Biology of Marine Models (LBI2M), Station Biologique de Roscoff (SBR), 29680 Roscoff, France. Email: loraine.gueguen@sb-roscoff.fr
  2. CNRS, Sorbonne Université, FR2424, ABiMS, Station Biologique, 29680, Roscoff, France
  3. INRA, UMR IGEPP, BIPAA/GenOuest, Campus Beaulieu, Rennes, France
  4. Plate-forme GenOuest, Univ Rennes, Inria, CNRS, IRISA, F-35000 Rennes,France
  5. Bioinformatics Group, Department of Computer Science, University of Freiburg, 79110 Freiburg im Breisgau, Germany
Speakers
LG

Loraine Guéguen

Station Biologique de Roscoff

GCC2019 abstract 96 pdf
poster gcc2019 gueguen gga algae final pdf
Thursday July 4, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 42 C: Experience of Galaxy training at a biomedical institute
→ Abstract, Poster

Maria Doyle 1 and Richard Lupat 2

  1. Research Computing Facility, Peter MacCallum Cancer Centre, Australia
  2. Bioinformatics Core, Peter MacCallum Cancer Centre, Australia
Speakers
MD

Maria Doyle

Application and Training Specialist, Peter MacCallum Cancer Centre

GCC2019 abstract 87 pdf
GCC2019 poster Doyle pdf
Thursday July 4, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 45 C: Galaxy-Bricks a Tool for Data Literacy and Scientific Approach Education in the Context of Citizen Science
Simon Bénateau, Sébastien Turpin and Yvan Le Bras
Speakers
avatar for Simon Bénateau

Simon Bénateau

Paris, French National Museum of Natural History

GCC2019 abstract 20 pdf
Thursday July 4, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 48 C: The ChemicalToolBox - Computational Chemistry in Galaxy
→ Abstract, Poster

Simon Bray and Björn Grüning

Freiburg Galaxy Team, Bioinformatics Group, University of Freibu
Speakers
avatar for Simon Bray

Simon Bray

University of Freiburg
I'm a member of the European Galaxy Team at the University of Freiburg, interested in computational chemistry, molecular dynamics, and the use of workflow management systems for virtual screening.

GCC2019 abstract 41 pdf
CTB pdf
Thursday July 4, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 51 C: How Usable is Galaxy? A Usability Evaluation of Galaxy
→ Abstract, Poster (doi: 10.7490/f1000research.1116995.1)

Daniel Brand 1, Ngoc-Huy Truong 1, Rul von Stülpnagel 1

  1. Center for Cognitive Science, University of Freiburg
Speakers
NT

GCC2019 abstract 77 pdf
Poster How Usable is Galaxy Galaxy Community Conference 2019 withoutIcons pdf
Thursday July 4, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

14:50 CEST

Poster 54 C: TrackFind: FAIR Search of Genomic Tracks
→ Abstract, Poster

Dmytro Titov 1, Sveinung Gundersen 1, Radmila Kompova 1, Salvador Capella-Gutierrez 2, Finn
Drabløs 3, José M. Fernández 2 , Kieron Taylor 4, Daniel Zerbino 4, Eivind Hovig 1,5

  1. Center for Bioinformatics, University of Oslo (UiO), Norway
  2. INB Coordination Node / ELIXIR ES, Barcelona Supercomputing Center, Spain
  3. Norwegian University of Science and Technology (NTNU), Norway
  4. European Molecular Biology Laboratory, European Bioinformatics Institute, United Kingdom
  5. Department of Tumor biology, Institute for Cancer Research, Oslo University Hospital (OUH), Norway
Speakers
RK

GCC2019 abstract 107 pdf
Kompova GCC2019 TrackFind outline pdf
Thursday July 4, 2019 14:50 - 15:50 CEST
Konzerthaus
  C. Posters / Demos / Sponsors, Posters

15:00 CEST

Demo 10 C: Interactive Galaxy Visualizations for Multi-omics Research
Ray Sajulga, Praveen Kumar, Caleb Easterly, Subina Mehta, Thomas McGowan, James Johnson, Pratik Jagtap and Timothy J. Griffin
Speakers
avatar for Ray Sajulga

Ray Sajulga

University of Minnesota

GCC2019 abstract 39 pdf
Thursday July 4, 2019 15:00 - 15:20 CEST
Spain
  C. Posters / Demos / Sponsors, Demos

15:00 CEST

Demo 12 C: Visual Refinement of Genome Annotations with Apollo in a Community Environment
Nathan Dunn, Deepak Unni, Colin Diesh, Helena Rasche, Anthony Bretaudeau, Nomi Harris and Ian Holmes
Speakers
avatar for Nathan Dunn

Nathan Dunn

Software Developer, Lawrence Berkeley National Lab

GCC2019 abstract 14 pdf
Thursday July 4, 2019 15:00 - 15:20 CEST
France
  C. Posters / Demos / Sponsors, Demos

15:00 CEST

Demo 14 C: Galaxy on Kubernetes
Enis Afgan, Nuwan Goonasekera, Sergey Golitsynskiy and Alexandru Mahmoud
Speakers
avatar for That Other Person

That Other Person

Software Engineer, Galaxy Project, Johns Hopkins University
avatar for Enis Afgan

Enis Afgan

Research Scientist, Johns Hopkins University (JHU)
A long-standing member of the Galaxy community, spanning roles from system deployment to leadership.
avatar for Alexandru Mahmoud

Alexandru Mahmoud

Galaxy Team, Johns Hopkins University
avatar for Nuwan Goonasekera

Nuwan Goonasekera

University of Melbourne

GCC2019 abstract 49 pdf
Thursday July 4, 2019 15:00 - 15:20 CEST
Belgium
  C. Posters / Demos / Sponsors, Demos

15:25 CEST

Demo 11 C: NanoGalaxy: A Galaxy toolkit and workflows for long-read sequencing
Willem de Koning, Milad Miladi, Saskia Hiltemann and Bjoern Gruening
Speakers
avatar for Willem de Koning

GCC2019 abstract 73 pdf
Thursday July 4, 2019 15:25 - 15:45 CEST
Spain
  C. Posters / Demos / Sponsors, Demos

15:25 CEST

Demo 13 C: The IRIDA Platform for Microbial Genomics
Aaron Petkau, Thomas Matthews, Franklin Bristow, Josh Adam, Jeff Thiessen, Sukhdeep Sidhu, Peter Kruczkiewicz, Emma Griffiths, Damion Dooley, Dan Fornika, Geoff Winsor, Amogelang Raphenya, Morag Graham, Eduardo Taboada, Andrew McArthur, Robert Beiko, William Hsiao, Fiona Brinkman and Gary Van Domselaar
Speakers
avatar for Aaron Petkau

Aaron Petkau

Bioinformatician, Public Health Agency of Canada

GCC2019 abstract 38 pdf
Thursday July 4, 2019 15:25 - 15:45 CEST
France
  C. Posters / Demos / Sponsors, Demos
 
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