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GCC2019 has ended
The 2019 Galaxy Community Conference (GCC2019) was held in Freiburg, Germany, 1-8 July.  There was one day of training, three days of mixed meeting and training, and then two to four days of CollaborationFest.  The meeting featured joint & parallel sessions; invited, accepted, and lightning talks; poster and demo sessions; birds-of-a-feather meetups; social events; and training sessions every day.

Thanks to everyone who helped make GCC2019 a success!
avatar for Lucille Delisle

Lucille Delisle

EPFL SV ISREC UPDUB
Post-doc
Switzerland
Hi,
I am a Post-doc in Denis Duboule lab working on gene regulation during development.
For the scientific part, I analyzed various NGS methods including Hi-C, ATAC-seq, CUT&RUN. I recently developped a new method for single-cell RNA-seq, named baredSC.
For the galaxy part, I develop pyGenomeTracks, I contributed to the ATAC-seq and RNA-seq training material, I am admin of a local galaxy instance with 10 users.
Feel free to contact me.
Monday, July 1
 

09:00 CEST

Conference Desk Open Konzerthaus

10:00 CEST

Introduction to Galaxy Administration I GreeceMartin Čech • Enis Afgan • Simon Gladman • Marius van den Beek • John Chilton • Nate Coraor • Helena Rasche

12:00 CEST

Lunch Konzerthaus

13:00 CEST

Introduction to Galaxy Administration II GreeceEnis Afgan • Simon Gladman • Martin Čech • Marius van den Beek • John Chilton • Nate Coraor • Helena Rasche

15:00 CEST

Break Konzerthaus

15:30 CEST

Introduction to Galaxy Administration III GreeceEnis Afgan • Simon Gladman • Martin Čech • John Chilton • Nate Coraor • Helena Rasche

18:00 CEST

BOF: Single Cell OffsiteMehmet Tekman
 
Tuesday, July 2
 

08:00 CEST

Conference Desk Open Konzerthaus

08:59 CEST

Session 1: Opening Plenary GreeceBjorn Gruning

09:00 CEST

Welcome GreeceAnika Erxleben • Bjorn Gruning

09:10 CEST

Invited Talk: Evolution of X chromosome recognition during Drosophila Dosage Compensation GreeceClaudia Isabelle Keller Valsecchi

09:40 CEST

Galaxy Australia – inside the national vision of a data commons GreeceGareth Price

10:00 CEST

A Machine Learning Tool Suite for Galaxy GreeceJeremy Goecks

10:20 CEST

An Update on Galaxy Workflows: More Accessible, Expressive, Robust, and Scalable GreeceJohn Chilton • Marius van den Beek

10:30 CEST

Break / Sponsors Konzerthaus

10:59 CEST

Session 2: Administration & Development GreeceHelena Rasche

11:00 CEST

GalaxyCloudRunner: Streamlined Cloud Bursting for Galaxy GreeceNuwan Goonasekera

11:07 CEST

Laniakea: A Galaxy-on-demand Provider Platform Through Cloud Technologies GreeceMarco Antonio Tangaro

11:27 CEST

Enabling Single Sign-On for Multiple Galaxy Instances GreeceEnis Afgan

11:34 CEST

How – And How not – to manage successful local Galaxies deployments GreecePhilip Mabon

11:54 CEST

Building a Pulsar Network across Europe GreeceGianmauro Cuccuru

12:00 CEST

Lunch Konzerthaus

12:15 CEST

Birds-of-a-Feather (BoFs), with Lunch Konzerthaus

13:20 CEST

How to create a Galaxy Tool GreeceJohn Chilton • Nicola Soranzo

14:50 CEST

Session 4: Posters, Demos, and Sponsors Konzerthaus

15:50 CEST

Machine Learning with Galaxy - Predict age from RNA-seq dataset GermanyAlireza Khanteymoori • Jeremy Goecks • Anup Kumar

17:20 CEST

Group Picture Konzerthaus

17:29 CEST

Session 6: Epigenetics Track & Late Breaking Lightning Talks GreeceDevon Ryan

17:30 CEST

HiCExplorer 3: A toolbox for Hi-C data analysis GreeceJoachim Wolff

17:50 CEST

Histone Deacetylases 1/2 In Microglia Function During Development And Neurodegeneration GreeceMaximilian Frosch

17:57 CEST

Analysis and visualization of the human cardiac myocyte epigenome using Galaxy GreeceRalf Gilsbach

18:17 CEST

Late Breaking Lightning Talks Greece

19:00 CEST

Birds-of-a-Feather (BoFs), with Your Dinner! Offsite The Galaxy Training Network BoF! OffsiteSaskia Hiltemann • Bérénice Batut • Helena Rasche
 
Wednesday, July 3
 

08:00 CEST

Conference Desk Open Konzerthaus

08:59 CEST

Session 7: Transcriptomics & Genomics Track GermanyAnna Syme

09:00 CEST

Invited Talk: Pou5f3, SoxB1 and Nanog control the Zygotic Genome Activation in Zebrafish by Chromatin Remodeling GermanyMarina Veil

09:30 CEST

Single-cell RNA Analysis in Galaxy on 10X Datasets GermanyMehmet Tekman

09:50 CEST

Biology-driven classification of Single-Cells RNAseq data in Galaxy GermanyChristophe Antoniewski

10:10 CEST

Improving Transcriptome Analysis with Molecular Indices and Galaxy GermanyBrad Langhorst

10:17 CEST

Transposon Insertion Sequencing Analysis in Galaxy GermanyDelphine Lariviere

10:59 CEST

Session 8: Administration & Development Track GreeceDavid Morais

11:00 CEST

Working Effectively with Remote Data in Galaxy - A Progress Report GreeceJohn Chilton

11:07 CEST

Testing and Visualizing the State of Galaxy Tools and Workflows GreeceMartin Čech

11:27 CEST

Setting up a Galaxy Platform in a HPC Infrastructure for Genomics Implementation into Diagnosis Routines for a Health Reference Center GreeceMiguel Juliá

11:34 CEST

RealTimeTools: Integrating, Customizing, and Accessing UI-based Tools in Galaxy GreeceDaniel Blankenberg

11:54 CEST

Creating a Universe of Galaxies: The UseGalaxy.* Project GreeceNate Coraor

12:00 CEST

Lunch Konzerthaus

13:20 CEST

Single cell RNA-seq analysis GermanyAlex Ostrovsky • Mehmet Tekman

14:50 CEST

Session 10: Posters, Demos, and Sponsors Konzerthaus

15:25 CEST

Demo 08 B: Tool Prediction in Galaxy Workflows using Deep Learning SpainAnup Kumar

15:50 CEST

Single cell RNA-seq analysis II GermanyAlex Ostrovsky • Mehmet Tekman

17:30 CEST

Invited Talk: Galaxy Community Update GreeceAnton Nekrutenko • James Taylor

18:00 CEST

Tool Prediction in Galaxy Workflows using Deep Learning GreeceAnup Kumar

18:07 CEST

Street Science Community: make science tangible & accessible by bringing it to the “street” with open science workshops GreeceTeresa Müller

19:30 CEST

Conference Dinner Offsite
 
Thursday, July 4
 

08:00 CEST

Conference Desk Open Konzerthaus

08:59 CEST

Session 13:Outside the Genome & Community Track GermanyBérénice Batut

09:00 CEST

Invited Talk: Data visualisation by citizen science participants: the case of birds and bats monitoring schemes and Galaxy-E GermanyYves Bas • Romain Lorrillière

09:30 CEST

Galaxy-Bricks a Tool for Data Literacy and Scientific Approach Education in the Context of Citizen Science GermanySimon Bénateau

09:37 CEST

CITIZEN SCIENCE PROJECT in ECOLOGY with the GALAXY-E PLATFORM GermanyBenjamin Yguel

09:44 CEST

Galaxy-E project: 2019 news GermanyYvan Le Bras

10:04 CEST

The ChemicalToolBox - Computational Chemistry in Galaxy GermanySimon Bray

10:11 CEST

Improved Reference Data Management in Galaxy: Towards a Plant Data Analysis Platform GermanyIgnacio Eguinoa

10:18 CEST

Use Galaxy, Right Now! GermanyHelena Rasche • Dave Clements

10:25 CEST

Galaxy Publication Library GermanyDave Clements

10:30 CEST

Break / Sponsors Konzerthaus

10:59 CEST

Session 14: Variation, Metagenomics & Assembly Track GermanySaskia Hiltemann

11:00 CEST

The IRIDA Platform for Microbial Genomics GermanyAaron Petkau

11:20 CEST

Combat-tb Workbench, A Customizable Platform For Variant Discovery And Annotation, Phylogeny Construction And Variant Prioritisation GermanyZiphozakhe Mashologu

11:27 CEST

High throughput HIV next generation sequence analysis in Galaxy GermanyDave Bouvier

11:47 CEST

NanoGalaxy: A Galaxy toolkit and workflows for long-read sequencing GermanyWillem de Koning

11:54 CEST

MITOLINK: An integrated Web-based Workflow System to Evaluate Genotype-Phenotype Correlations in Human Mitochondrial Diseases GermanyAnshu Bhardwaj

12:00 CEST

Lunch Konzerthaus

12:15 CEST

Birds-of-a-Feather (BoFs), with Lunch Konzerthaus

13:20 CEST

Machine Learning with Galaxy - Predict age from DNA-methylation dataset GermanyAlireza Khanteymoori • Anup Kumar

14:50 CEST

16: Poster, Demo, and Sponsor Session Konzerthaus Poster 33 C: HiCExplorer 3: A toolbox for Hi-C data analysis KonzerthausJoachim Wolff

15:25 CEST

Demo 11 C: NanoGalaxy: A Galaxy toolkit and workflows for long-read sequencing SpainWillem de Koning

15:50 CEST

Genomic assembly and data analysis in Galaxy with Nanopore ONT long read sequencing GreeceWillem de Koning • Saskia Hiltemann • Milad Miladi

17:29 CEST

Session 18: Closing Plenary GreeceAndrew Lonie

17:30 CEST

Invited Talk: UseGalaxy: Elucidating chromatin biology of mouse cardiomyocytes GreeceStephan Nothjunge

18:00 CEST

Galaxy and Training: 2019 updates from the Galaxy Training Network GreeceBérénice Batut

18:20 CEST

Closing GreeceDave Clements • Bjorn Gruning • Anika Erxleben

19:00 CEST

The Freiburg City Tour BoF!FILLING Offsite
 
Friday, July 5
 

08:00 CEST

Conference Desk Open Konzerthaus

09:00 CEST

CollaborationFest: Core Konzerthaus
 
Saturday, July 6
 

08:00 CEST

Conference Desk Open Konzerthaus

09:00 CEST

CollaborationFest: Core Konzerthaus