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GCC2019 has ended
The 2019 Galaxy Community Conference (GCC2019) was held in Freiburg, Germany, 1-8 July.  There was one day of training, three days of mixed meeting and training, and then two to four days of CollaborationFest.  The meeting featured joint & parallel sessions; invited, accepted, and lightning talks; poster and demo sessions; birds-of-a-feather meetups; social events; and training sessions every day.

Thanks to everyone who helped make GCC2019 a success!
avatar for Magnus Palmsblad

Magnus Palmsblad

Leiden University Medical Center
Associate Professor/Group Leader
Leiden
Analytical chemistry, mass spectrometry, proteomics, metabolomics, text mining, data integration, ontologies
Monday, July 1
 

09:00 CEST

Beer Decoded, Here and Now! Italy Conference Desk Open Konzerthaus

10:00 CEST

Introduction to Using Galaxy (Galaxy 101) GermanyMo Heydarian • Jennifer Hillman-Jackson

12:00 CEST

Lunch Konzerthaus

13:00 CEST

Beyond the Intro: Further Adventures in Using Galaxy GermanyMo Heydarian • Jennifer Hillman-Jackson

15:00 CEST

Break Konzerthaus

15:30 CEST

Analyzing Large / Complex Experimental Designs with Galaxy GermanyDaniel Blankenberg • Marius van den Beek • Mo Heydarian • Jennifer Hillman-Jackson

18:00 CEST

Birds-of-a-Feather (BoFs), with Your Dinner! Offsite The Computational Chemistry BoF OffsiteBjorn Gruning • Chris Barnett • Simon Bray
 
Tuesday, July 2
 

08:59 CEST

Session 1: Opening Plenary GreeceBjorn Gruning

09:00 CEST

Welcome GreeceAnika Erxleben • Bjorn Gruning

09:10 CEST

Invited Talk: Evolution of X chromosome recognition during Drosophila Dosage Compensation GreeceClaudia Isabelle Keller Valsecchi

09:40 CEST

Galaxy Australia – inside the national vision of a data commons GreeceGareth Price

10:00 CEST

A Machine Learning Tool Suite for Galaxy GreeceJeremy Goecks

10:20 CEST

An Update on Galaxy Workflows: More Accessible, Expressive, Robust, and Scalable GreeceJohn Chilton • Marius van den Beek

10:30 CEST

Break / Sponsors Konzerthaus

10:59 CEST

Session 2: Outside the Genome & Community Track GermanyYvan Le Bras

11:00 CEST

Galaxy Computational Chemistry GermanyChris Barnett

11:20 CEST

Climate Analysis with Galaxy GermanyAnne Fouilloux

11:40 CEST

Galaxy Image Analysis: Web-based microscopy image analysis and cellular phenotyping GermanyThomas Wollmann

12:15 CEST

Arts & Crafts CzechiaSaskia Hiltemann • Helena Rasche

13:20 CEST

How to create a Galaxy Tool GreeceJohn Chilton • Nicola Soranzo

15:00 CEST

Demo 01 A: Galaxy Computational Chemistry SpainChris Barnett

15:50 CEST

Metatranscriptomics and multi-omics functional microbiome analysis BelgiumTimothy J. Griffin • Bérénice Batut • Ray Sajulga • Pratik Jagtap

17:20 CEST

Group Picture Konzerthaus

17:30 CEST

Using Galaxy for Creation and Execution of Text Mining Workflows in the OpenMinTeD platform GermanyDimitrios Galanis

17:50 CEST

To Better Benefit from Shared Tasks in Biomedical Text Mining GermanyMouhamadou Ba

17:57 CEST

The LAPPS Grid/Galaxy Platform for Mining Scientific Publications GermanyAlexandru Mahmoud

19:00 CEST

The Freiburg City Tour BoF!FULL Offsite
 
Wednesday, July 3
 

08:59 CEST

Session 7: Transcriptomics & Genomics Track GermanyAnna Syme

09:00 CEST

Invited Talk: Pou5f3, SoxB1 and Nanog control the Zygotic Genome Activation in Zebrafish by Chromatin Remodeling GermanyMarina Veil

09:30 CEST

Single-cell RNA Analysis in Galaxy on 10X Datasets GermanyMehmet Tekman

09:50 CEST

Biology-driven classification of Single-Cells RNAseq data in Galaxy GermanyChristophe Antoniewski

10:10 CEST

Improving Transcriptome Analysis with Molecular Indices and Galaxy GermanyBrad Langhorst

10:17 CEST

Transposon Insertion Sequencing Analysis in Galaxy GermanyDelphine Lariviere

10:59 CEST

Session 8: Administration & Development Track GreeceDavid Morais

11:00 CEST

Working Effectively with Remote Data in Galaxy - A Progress Report GreeceJohn Chilton

11:07 CEST

Testing and Visualizing the State of Galaxy Tools and Workflows GreeceMartin Čech

11:27 CEST

Setting up a Galaxy Platform in a HPC Infrastructure for Genomics Implementation into Diagnosis Routines for a Health Reference Center GreeceMiguel Juliá

11:34 CEST

RealTimeTools: Integrating, Customizing, and Accessing UI-based Tools in Galaxy GreeceDaniel Blankenberg

11:54 CEST

Creating a Universe of Galaxies: The UseGalaxy.* Project GreeceNate Coraor

12:00 CEST

Lunch Konzerthaus

12:15 CEST

BoF: Multi-omics FranceTimothy J. Griffin • Pratik Jagtap

13:20 CEST

Galaxy Code Architecture GreeceJohn Chilton • Nate Coraor

14:50 CEST

Poster 20 B: Testing and Visualizing the State of Galaxy Tools and Workflows KonzerthausMartin Čech Poster 23 B: Galaxy on Kubernetes: where we are and future challenges KonzerthausPablo Moreno Poster 26 B: RealTimeTools: Integrating, Customizing, and Accessing UI-based Tools in Galaxy KonzerthausDaniel Blankenberg Poster 50 B: Using Galaxy for Creation and Execution of Text Mining Workflows in the OpenMinTeD platform KonzerthausDimitrios Galanis Poster 53 B: UseGalaxy.eu: Community, Training, Infrastructure, and Users KonzerthausHelena Rasche

15:00 CEST

Demo 15 B: CWL in Galaxy, 2019-06 snapshot ItalyMichael R. Crusoe • John Chilton • Hervé Ménager

15:25 CEST

Demo 06 B: ProteoRE, a Galaxy-based platform for the annotation and the interpretation of proteomics data in biomedical research BelgiumFlorence Combes Demo 08 B: Tool Prediction in Galaxy Workflows using Deep Learning SpainAnup Kumar

15:50 CEST

Beyond the Intro: Further Adventures in Using Galaxy ItalyMo Heydarian • Jennifer Hillman-Jackson

17:29 CEST

Session 12: Plenary GreeceFrederik Coppens

17:30 CEST

Invited Talk: Galaxy Community Update GreeceAnton Nekrutenko • James Taylor

18:00 CEST

Tool Prediction in Galaxy Workflows using Deep Learning GreeceAnup Kumar

18:07 CEST

Street Science Community: make science tangible & accessible by bringing it to the “street” with open science workshops GreeceTeresa Müller

19:30 CEST

Conference Dinner Offsite
 
Thursday, July 4
 

08:59 CEST

Session 13: Proteomics & Metabolomics & Late Breaking Track GreeceMelanie Föll

09:00 CEST

Invited Talk: Data visualisation by citizen science participants: the case of birds and bats monitoring schemes and Galaxy-E GermanyYves Bas • Romain Lorrillière Metaproteomics Powered By Metatranscriptomics: Towards a Multi-omic Functional Microbiome Analysis Within Galaxy GreecePratik Jagtap

09:20 CEST

Interactive Galaxy Visualizations for Multi-omics Research GreeceRay Sajulga

09:27 CEST

ProteoRE, a Galaxy-based platform for the annotation and the interpretation of proteomics data in biomedical research GreeceFlorence Combes

09:47 CEST

Galaxy Wrapper for MaxQuant GreeceDamian Glätzer

09:54 CEST

Application of Halogen Bonding in Molecular and Drug Design Facilitated by a Galaxy Webserver GreeceFrank M. Boeckler

10:14 CEST

Late Breaking Lightning Talks Greece

10:30 CEST

Break / Sponsors Konzerthaus

10:59 CEST

Session 14: Proteomics & Metabolomics GreecePratik Jagtap

11:00 CEST

Analysing and organising large-scale metabolome annotation studies with Django, ISA and Galaxy GreeceThomas N. Lawson

11:20 CEST

Reproducible and accessible analysis of spatially resolved proteomics and metabolomics data GreeceMelanie Föll

11:40 CEST

Workflow4Metabolomics: an international computing infrastructure for Metabolomics GreeceMélanie Petera • Romain Dallet • Gildas Le Corguillé

12:00 CEST

Lunch Konzerthaus

12:15 CEST

BoF: Text Mining / NLP BelgiumSebastian Schaaf

13:20 CEST

Proteomic data analysis with Galaxy BelgiumMatthias Fahrner • Maren Stillger • Melanie Föll

14:50 CEST

Poster 12 C: Reproducible and accessible analysis of spatially resolved proteomics and metabolomics data KonzerthausMelanie Föll Poster 36 C: EDAM: the ontology of bioinformatics operations, types of data, topics, and data formats (2019 update) KonzerthausMatúš Kalas Poster 45 C: Galaxy-Bricks a Tool for Data Literacy and Scientific Approach Education in the Context of Citizen Science KonzerthausSimon Bénateau Poster 48 C: The ChemicalToolBox - Computational Chemistry in Galaxy KonzerthausSimon Bray Poster 51 C: How Usable is Galaxy? A Usability Evaluation of Galaxy KonzerthausNgoc-Huy Truong

15:00 CEST

Demo 10 C: Interactive Galaxy Visualizations for Multi-omics Research SpainRay Sajulga

15:50 CEST

Handling integrated biological data using Python, Jupyter, and InterMine GermanyKevin Reierskog • Yo Yehudi

17:29 CEST

Session 18: Closing Plenary GreeceAndrew Lonie

17:30 CEST

Invited Talk: UseGalaxy: Elucidating chromatin biology of mouse cardiomyocytes GreeceStephan Nothjunge

18:00 CEST

Galaxy and Training: 2019 updates from the Galaxy Training Network GreeceBérénice Batut

18:20 CEST

Closing GreeceDave Clements • Bjorn Gruning • Anika Erxleben

19:00 CEST

BIKE - Lets Do It! : BoF for Galaxy Bikers (Bicycling). OffsitePratik Jagtap • Melanie Föll • Magnus Palmsblad
 

My Moderators Sessions

Thursday, July 4
 

19:00 CEST

BIKE - Lets Do It! : BoF for Galaxy Bikers (Bicycling). OffsitePratik Jagtap • Melanie Föll • Magnus Palmsblad