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GCC2019 has ended
The 2019 Galaxy Community Conference (GCC2019) was held in Freiburg, Germany, 1-8 July.  There was one day of training, three days of mixed meeting and training, and then two to four days of CollaborationFest.  The meeting featured joint & parallel sessions; invited, accepted, and lightning talks; poster and demo sessions; birds-of-a-feather meetups; social events; and training sessions every day.

Thanks to everyone who helped make GCC2019 a success!
avatar for Michael Faubladier

Michael Faubladier

Limagrain
Bioinformatician
Chappes
Tuesday, July 2
 

12:00 CEST

Lunch Konzerthaus

13:19 CEST

Session 3: Training Konzerthaus

13:20 CEST

How to create a Galaxy Tool GreeceJohn Chilton • Nicola Soranzo

14:50 CEST

Poster 10 A: Dima: Data-driven recommendation for a high-performing imputation algorithm KonzerthausJanine Egert Poster 13 A: Evaluation of tools and workflows for database construction for environmental metaproteomics KonzerthausVirginie Jouffret Poster 19 A: EpiGeEC allows fast comparison of user datasets with thousands of public epigenomic datasets through Galaxy KonzerthausJonathan Laperle Poster 34 A: A Newly Opened Galaxy Platform at Clermont Auvergne University KonzerthausNadia Goué Poster 43 A: Galaxy and Training: 2019 updates from the Galaxy Training Network KonzerthausBérénice Batut Poster 46 A: Galaxy-E project: 2019 news KonzerthausYvan Le Bras Session 4: Posters, Demos, and Sponsors Konzerthaus

15:49 CEST

Session 5: Training Konzerthaus

15:50 CEST

Scripting Galaxy through BioBlend GreeceMarius van den Beek • Nicola Soranzo

17:20 CEST

Group Picture Konzerthaus

17:29 CEST

Session 6: Outside the Genome & Community Track GermanyAnne Fouilloux

17:30 CEST

Using Galaxy for Creation and Execution of Text Mining Workflows in the OpenMinTeD platform GermanyDimitrios Galanis

17:50 CEST

To Better Benefit from Shared Tasks in Biomedical Text Mining GermanyMouhamadou Ba

17:57 CEST

The LAPPS Grid/Galaxy Platform for Mining Scientific Publications GermanyAlexandru Mahmoud

18:17 CEST

Infrastructure for Healthier Living: Galaxy at Quadram Institute Bioscience GermanyThanh Le Viet

18:24 CEST

How Usable is Galaxy? A Usability Evaluation of Galaxy GermanyNgoc-Huy Truong
 
Wednesday, July 3
 

08:59 CEST

Session 7: Administration & Development Track GreeceSimon Gladman

09:00 CEST

Containerizing Galaxy server as a Singularity application on HPC clusters for GenAP GreeceDavid Morais

09:20 CEST

Galaxy on Kubernetes: where we are and future challenges GreecePablo Moreno

09:40 CEST

A Minimal Docker Image for Galaxy GreeceThat Other Person

09:47 CEST

CVMFS-CSI for Galaxy: Efficient Access to Read-only Data in Kubernetes GreeceAlexandru Mahmoud

09:54 CEST

gxadmin: usegalaxy.* administration wisdom GreeceHelena Rasche

10:14 CEST

Galaxy container for Hinxton Single Cell Interactive Analysis Portal (HiSciAP) GreeceJonathan Manning

10:30 CEST

Break / Sponsors Konzerthaus

10:59 CEST

Session 8: Administration & Development Track GreeceDavid Morais

11:00 CEST

Working Effectively with Remote Data in Galaxy - A Progress Report GreeceJohn Chilton

11:07 CEST

Testing and Visualizing the State of Galaxy Tools and Workflows GreeceMartin Čech

11:27 CEST

Setting up a Galaxy Platform in a HPC Infrastructure for Genomics Implementation into Diagnosis Routines for a Health Reference Center GreeceMiguel Juliá

11:34 CEST

RealTimeTools: Integrating, Customizing, and Accessing UI-based Tools in Galaxy GreeceDaniel Blankenberg

11:54 CEST

Creating a Universe of Galaxies: The UseGalaxy.* Project GreeceNate Coraor

12:00 CEST

Lunch Konzerthaus

13:19 CEST

Session 9: Training Konzerthaus

13:20 CEST

Galaxy Code Architecture GreeceJohn Chilton • Nate Coraor

14:50 CEST

Poster 23 B: Galaxy on Kubernetes: where we are and future challenges KonzerthausPablo Moreno Poster 38 B: Visual Refinement of Genome Annotations with Apollo in a Community Environment KonzerthausNathan Dunn Poster 47 B: Climate Analysis with Galaxy KonzerthausAnne Fouilloux Session 10: Posters, Demos, and Sponsors Konzerthaus

15:49 CEST

Session 11: Training Konzerthaus

15:50 CEST

Running Galaxy on Kubernetes GreecePablo Moreno • That Other Person • Enis Afgan • Nuwan Goonasekera • Alexandru Mahmoud

17:29 CEST

Session 12: Plenary GreeceFrederik Coppens

17:30 CEST

Invited Talk: Galaxy Community Update GreeceAnton Nekrutenko • James Taylor

18:00 CEST

Tool Prediction in Galaxy Workflows using Deep Learning GreeceAnup Kumar

18:07 CEST

Street Science Community: make science tangible & accessible by bringing it to the “street” with open science workshops GreeceTeresa Müller

19:30 CEST

Conference Dinner Offsite
 
Thursday, July 4
 

08:59 CEST

Session 13: Proteomics & Metabolomics & Late Breaking Track GreeceMelanie Föll

09:00 CEST

Metaproteomics Powered By Metatranscriptomics: Towards a Multi-omic Functional Microbiome Analysis Within Galaxy GreecePratik Jagtap

09:20 CEST

Interactive Galaxy Visualizations for Multi-omics Research GreeceRay Sajulga

09:27 CEST

ProteoRE, a Galaxy-based platform for the annotation and the interpretation of proteomics data in biomedical research GreeceFlorence Combes

09:47 CEST

Galaxy Wrapper for MaxQuant GreeceDamian Glätzer

09:54 CEST

Application of Halogen Bonding in Molecular and Drug Design Facilitated by a Galaxy Webserver GreeceFrank M. Boeckler

10:14 CEST

Late Breaking Lightning Talks Greece

10:30 CEST

Break / Sponsors Konzerthaus

10:59 CEST

Session 14: Proteomics & Metabolomics GreecePratik Jagtap

11:00 CEST

Analysing and organising large-scale metabolome annotation studies with Django, ISA and Galaxy GreeceThomas N. Lawson

11:20 CEST

Reproducible and accessible analysis of spatially resolved proteomics and metabolomics data GreeceMelanie Föll

11:40 CEST

Workflow4Metabolomics: an international computing infrastructure for Metabolomics GreeceMélanie Petera • Romain Dallet • Gildas Le Corguillé

11:47 CEST

NanoGalaxy: A Galaxy toolkit and workflows for long-read sequencing GermanyWillem de Koning

11:54 CEST

MITOLINK: An integrated Web-based Workflow System to Evaluate Genotype-Phenotype Correlations in Human Mitochondrial Diseases GermanyAnshu Bhardwaj

12:00 CEST

Lunch Konzerthaus

13:20 CEST

15: Training Session Konzerthaus CVMFS and Pulsar GreeceSimon Gladman • Nate Coraor • Gianmauro Cuccuru • Helena Rasche

14:50 CEST

16: Poster, Demo, and Sponsor Session Konzerthaus Poster 03 C: Galaxy in fields, gardens and greenhouses for better seeds. KonzerthausMichael Faubladier • Camille Segard • Frederic Sapet

15:00 CEST

Demo 14 C: Galaxy on Kubernetes BelgiumThat Other Person • Enis Afgan • Alexandru Mahmoud • Nuwan Goonasekera

17:29 CEST

Session 18: Closing Plenary GreeceAndrew Lonie

17:30 CEST

Invited Talk: UseGalaxy: Elucidating chromatin biology of mouse cardiomyocytes GreeceStephan Nothjunge

18:00 CEST

Galaxy and Training: 2019 updates from the Galaxy Training Network GreeceBérénice Batut

18:20 CEST

Closing GreeceDave Clements • Bjorn Gruning • Anika Erxleben