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GCC2019
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The 2019
Galaxy Community Conference (GCC2019)
was held in Freiburg, Germany, 1-8 July. There was
one day of training
,
three days of mixed meeting and training
, and then
two to four days of CollaborationFest
. The meeting featured joint & parallel sessions; invited, accepted, and lightning talks;
poster
and
demo
sessions;
birds-of-a-feather meetups
;
social events
; and training sessions every day.
Thanks to everyone who helped make GCC2019 a success!
Schedule
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A. Training
All
Admin / Dev
Diverse Communities
Epigenetics
Introduction / General
Metagenomics / Assembly
Proteomics / Metabolomics
Transciptomics / Genome Variation
B. Talks: Admin / Dev
All
Session 2
Session 7
Session 8
B. Talks: Epigenetics
All
Session 6
B. Talks: General
B. Talks: Outside the Genome & Community
All
Session 13
Session 2
Session 6
B. Talks: Proteomics / Metabolomics
All
Session 13
Session 14
B. Talks: Transcriptomics / Genomics
All
Session 7
Session 8
B. Talks: Variation / Metagenomics / Assembly
All
Session 14
C. Posters / Demos / Sponsors
All
Demos
Posters
Sponsors
D. Break / Social / Networking / Meal
All
BoFs
Break
Demos
Meal
Sponsors
E. Help
F. CollaborationFest: Core
G. CollaborationFest: Encore
Back to Speakers
NN
Naira Naouar
ARTbio
naira.naouar@upmc.fr
Tuesday
, July 2
15:50 CEST
Variant Calling II - causative variant discovery
Spain
Wolfgang Maier
17:20 CEST
Group Picture
Konzerthaus
17:30 CEST
HiCExplorer 3: A toolbox for Hi-C data analysis
Greece
Joachim Wolff
17:50 CEST
Histone Deacetylases 1/2 In Microglia Function During Development And Neurodegeneration
Greece
Maximilian Frosch
17:57 CEST
Analysis and visualization of the human cardiac myocyte epigenome using Galaxy
Greece
Ralf Gilsbach
Wednesday
, July 3
08:59 CEST
Session 7: Transcriptomics & Genomics Track
Germany
Anna Syme
09:00 CEST
Invited Talk: Pou5f3, SoxB1 and Nanog control the Zygotic Genome Activation in Zebrafish by Chromatin Remodeling
Germany
Marina Veil
09:30 CEST
Single-cell RNA Analysis in Galaxy on 10X Datasets
Germany
Mehmet Tekman
09:50 CEST
Biology-driven classification of Single-Cells RNAseq data in Galaxy
Germany
Christophe Antoniewski
10:10 CEST
Improving Transcriptome Analysis with Molecular Indices and Galaxy
Germany
Brad Langhorst
10:17 CEST
Transposon Insertion Sequencing Analysis in Galaxy
Germany
Delphine Lariviere
10:59 CEST
Session 8: Transcriptomics & Genomics Track
Germany
Anshu Bhardwaj
11:00 CEST
Working Effectively with Remote Data in Galaxy - A Progress Report
Greece
John Chilton
11:07 CEST
Testing and Visualizing the State of Galaxy Tools and Workflows
Greece
Martin Čech
11:27 CEST
Setting up a Galaxy Platform in a HPC Infrastructure for Genomics Implementation into Diagnosis Routines for a Health Reference Center
Greece
Miguel Juliá
11:34 CEST
RealTimeTools: Integrating, Customizing, and Accessing UI-based Tools in Galaxy
Greece
Daniel Blankenberg
11:54 CEST
Creating a Universe of Galaxies: The UseGalaxy.* Project
Greece
Nate Coraor
Training experience on “Data analysis and interpretation for clinical genomics” using Galaxy
Germany
Gianmauro Cuccuru
12:15 CEST
BoF: Multi-omics
France
Timothy J. Griffin • Pratik Jagtap
15:00 CEST
Demo 07 B: Knockdown Effects of MAGOHB on Alternative Splicing Via RNA-Seq Analysis
Spain
Glory Basumata
15:25 CEST
Demo 08 B: Tool Prediction in Galaxy Workflows using Deep Learning
Spain
Anup Kumar
15:50 CEST
Single cell RNA-seq analysis II
Germany
Alex Ostrovsky • Mehmet Tekman
19:30 CEST
Conference Dinner
Offsite
Thursday
, July 4
08:59 CEST
Session 13:Outside the Genome & Community Track
Germany
Bérénice Batut
09:00 CEST
Invited Talk: Data visualisation by citizen science participants: the case of birds and bats monitoring schemes and Galaxy-E
Germany
Yves Bas • Romain Lorrillière
11:20 CEST
Combat-tb Workbench, A Customizable Platform For Variant Discovery And Annotation, Phylogeny Construction And Variant Prioritisation
Germany
Ziphozakhe Mashologu
11:27 CEST
High throughput HIV next generation sequence analysis in Galaxy
Germany
Dave Bouvier
12:00 CEST
Lunch
Konzerthaus
13:20 CEST
CVMFS and Pulsar
Greece
Simon Gladman • Nate Coraor • Gianmauro Cuccuru • Helena Rasche
15:00 CEST
Demo 10 C: Interactive Galaxy Visualizations for Multi-omics Research
Spain
Ray Sajulga
15:25 CEST
Demo 13 C: The IRIDA Platform for Microbial Genomics
France
Aaron Petkau
15:50 CEST
Handling integrated biological data using Python, Jupyter, and InterMine
Germany
Kevin Reierskog • Yo Yehudi
Timezone
GCC2019
Europe/Berlin
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A. Training
All
Admin / Dev
Diverse Communities
Epigenetics
Introduction / General
Metagenomics / Assembly
Proteomics / Metabolomics
Transciptomics / Genome Variation
B. Talks: Admin / Dev
All
Session 2
Session 7
Session 8
B. Talks: Epigenetics
All
Session 6
B. Talks: General
B. Talks: Outside the Genome & Community
All
Session 13
Session 2
Session 6
B. Talks: Proteomics / Metabolomics
All
Session 13
Session 14
B. Talks: Transcriptomics / Genomics
All
Session 7
Session 8
B. Talks: Variation / Metagenomics / Assembly
All
Session 14
C. Posters / Demos / Sponsors
All
Demos
Posters
Sponsors
D. Break / Social / Networking / Meal
All
BoFs
Break
Demos
Meal
Sponsors
E. Help
F. CollaborationFest: Core
G. CollaborationFest: Encore
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