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GCC2019 has ended
The 2019 Galaxy Community Conference (GCC2019) was held in Freiburg, Germany, 1-8 July.  There was one day of training, three days of mixed meeting and training, and then two to four days of CollaborationFest.  The meeting featured joint & parallel sessions; invited, accepted, and lightning talks; poster and demo sessions; birds-of-a-feather meetups; social events; and training sessions every day.

Thanks to everyone who helped make GCC2019 a success!
avatar for Nathan Dunn

Nathan Dunn

Lawrence Berkeley National Lab
Software Developer
Berkeley, CA
Monday, July 1
 

09:00 CEST

Beer Decoded, Here and Now! Italy Conference Desk Open Konzerthaus

18:00 CEST

Genome Annotation BoF OffsiteNathan Dunn • Helena Rasche
 
Tuesday, July 2
 

08:59 CEST

Session 1: Opening Plenary GreeceBjorn Gruning

09:00 CEST

Welcome GreeceAnika Erxleben • Bjorn Gruning

10:20 CEST

An Update on Galaxy Workflows: More Accessible, Expressive, Robust, and Scalable GreeceJohn Chilton • Marius van den Beek

11:20 CEST

Climate Analysis with Galaxy GermanyAnne Fouilloux

11:27 CEST

Enabling Single Sign-On for Multiple Galaxy Instances GreeceEnis Afgan

13:20 CEST

How to create a Galaxy Tool GreeceJohn Chilton • Nicola Soranzo Variant calling I - from sequenced reads to variant lists SpainWolfgang Maier

15:50 CEST

Machine Learning with Galaxy - Predict age from RNA-seq dataset GermanyAlireza Khanteymoori • Jeremy Goecks • Anup Kumar Variant Calling II - causative variant discovery SpainWolfgang Maier

17:29 CEST

Session 6: Outside the Genome & Community Track GermanyAnne Fouilloux

17:30 CEST

Using Galaxy for Creation and Execution of Text Mining Workflows in the OpenMinTeD platform GermanyDimitrios Galanis

17:50 CEST

To Better Benefit from Shared Tasks in Biomedical Text Mining GermanyMouhamadou Ba

18:24 CEST

How Usable is Galaxy? A Usability Evaluation of Galaxy GermanyNgoc-Huy Truong
 
Wednesday, July 3
 

08:59 CEST

Session 7: Transcriptomics & Genomics Track GermanyAnna Syme

09:20 CEST

Galaxy on Kubernetes: where we are and future challenges GreecePablo Moreno

09:40 CEST

A Minimal Docker Image for Galaxy GreeceThat Other Person

09:50 CEST

Biology-driven classification of Single-Cells RNAseq data in Galaxy GermanyChristophe Antoniewski

09:54 CEST

gxadmin: usegalaxy.* administration wisdom GreeceHelena Rasche

10:10 CEST

Improving Transcriptome Analysis with Molecular Indices and Galaxy GermanyBrad Langhorst

10:17 CEST

Transposon Insertion Sequencing Analysis in Galaxy GermanyDelphine Lariviere

10:59 CEST

Session 8: Transcriptomics & Genomics Track GermanyAnshu Bhardwaj

11:00 CEST

Aequatus.js: a plugin to visualise gene trees in Galaxy GermanyAnil S. Thanki

11:20 CEST

Visual Refinement of Genome Annotations with Apollo in a Community Environment GermanyNathan Dunn

11:27 CEST

Architectural and Systems Improvements to G-OnRamp, a Collaborative Eukaryotic Genome Annotation Platform GermanyLuke Sargent

11:34 CEST

ChiRA: an integrated framework for Chimeric Read Annotation GermanyPavankumar Videm

11:54 CEST

Training experience on “Data analysis and interpretation for clinical genomics” using Galaxy GermanyGianmauro Cuccuru

12:15 CEST

BoF: Galactic Visualisation! ItalySaskia Hiltemann • Helena Rasche • Anil S. Thanki

13:20 CEST

The RNA workbench, best practices for RNA and high-throughput sequencing bioinformatics in Galaxy - RNA and transcriptomics FranceJoerg Fallmann • Florian Eggenhofer

15:50 CEST

Running Galaxy on Kubernetes GreecePablo Moreno • That Other Person • Enis Afgan • Nuwan Goonasekera • Alexandru Mahmoud Visualisation development in Galaxy FranceAnup Kumar • Aysam Guerler • Jeremy Goecks

17:29 CEST

Session 12: Plenary GreeceFrederik Coppens

17:30 CEST

Invited Talk: Galaxy Community Update GreeceAnton Nekrutenko • James Taylor
 
Thursday, July 4
 

09:00 CEST

Invited Talk: Data visualisation by citizen science participants: the case of birds and bats monitoring schemes and Galaxy-E GermanyYves Bas • Romain Lorrillière

09:20 CEST

Interactive Galaxy Visualizations for Multi-omics Research GreeceRay Sajulga

09:27 CEST

ProteoRE, a Galaxy-based platform for the annotation and the interpretation of proteomics data in biomedical research GreeceFlorence Combes

10:18 CEST

Use Galaxy, Right Now! GermanyHelena Rasche • Dave Clements

10:25 CEST

Galaxy Publication Library GermanyDave Clements

10:59 CEST

Session 14: Variation, Metagenomics & Assembly Track GermanySaskia Hiltemann

11:00 CEST

The IRIDA Platform for Microbial Genomics GermanyAaron Petkau

11:20 CEST

Combat-tb Workbench, A Customizable Platform For Variant Discovery And Annotation, Phylogeny Construction And Variant Prioritisation GermanyZiphozakhe Mashologu

11:47 CEST

NanoGalaxy: A Galaxy toolkit and workflows for long-read sequencing GermanyWillem de Koning

12:00 CEST

Lunch Konzerthaus

12:15 CEST

Arts & Crafts CzechiaSaskia Hiltemann • Helena Rasche

13:20 CEST

Assembly, annotation and analysis of bacterial genomes ItalyDelphine Lariviere • Anna Syme Import, handle, visualize and analyze biodiversity data in Galaxy SpainYvan Le Bras • Simon Bénateau Machine Learning with Galaxy - Predict age from DNA-methylation dataset GermanyAlireza Khanteymoori • Anup Kumar Proteomic data analysis with Galaxy BelgiumMatthias Fahrner • Maren Stillger • Melanie Föll

15:00 CEST

Demo 12 C: Visual Refinement of Genome Annotations with Apollo in a Community Environment FranceNathan Dunn

15:50 CEST

ELIXIR Galaxy AAI: Authentication and Authorisation Infrastructure ItalyKjetil Klepper Population genomics with RADseq SpainSimon Bénateau • Yvan Le Bras

17:29 CEST

Session 18: Closing Plenary GreeceAndrew Lonie

17:30 CEST

Invited Talk: UseGalaxy: Elucidating chromatin biology of mouse cardiomyocytes GreeceStephan Nothjunge

18:00 CEST

Galaxy and Training: 2019 updates from the Galaxy Training Network GreeceBérénice Batut

18:20 CEST

Closing GreeceDave Clements • Bjorn Gruning • Anika Erxleben

19:00 CEST

The Freiburg City Tour BoF!FILLING Offsite
 
Friday, July 5
 

09:00 CEST

CollaborationFest: Core Konzerthaus
 
Saturday, July 6
 

09:00 CEST

CollaborationFest: Core Konzerthaus
 
Sunday, July 7
 

09:00 CEST

CollaborationFest: Encore University of Freiburg Compute Center
 
Monday, July 8
 

09:00 CEST

CollaborationFest: Encore University of Freiburg Compute Center