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GCC2019 has ended
The 2019 Galaxy Community Conference (GCC2019) was held in Freiburg, Germany, 1-8 July.  There was one day of training, three days of mixed meeting and training, and then two to four days of CollaborationFest.  The meeting featured joint & parallel sessions; invited, accepted, and lightning talks; poster and demo sessions; birds-of-a-feather meetups; social events; and training sessions every day.

Thanks to everyone who helped make GCC2019 a success!

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Type: C. Posters / Demos / Sponsors [clear filter]
Tuesday, July 2
 

14:50 CEST

Poster 01 A: Alternative Splicing Analysis: The Silencing of the Human Colon Oxidase Complex KonzerthausBeáta Scholtz Poster 04 A: Gene Expression Analysis of In vitro Anti-filarial Activity of Natural and Synthetic Sesquiterpene Lactones from the Plant Neurolaena lobata KonzerthausLizzette Perez-Perez Poster 07 A: Knockdown Effects of MAGOHB on Alternative Splicing Via RNA-Seq Analysis KonzerthausGlory Basumata Poster 10 A: Dima: Data-driven recommendation for a high-performing imputation algorithm KonzerthausJanine Egert Poster 13 A: Evaluation of tools and workflows for database construction for environmental metaproteomics KonzerthausVirginie Jouffret Poster 16 A: Predicting Gene Expression from Histone Modifications and Chronological Age by RNA-Seq Data using Galaxy Machine Learning Tools KonzerthausAlireza Khanteymoori Poster 19 A: EpiGeEC allows fast comparison of user datasets with thousands of public epigenomic datasets through Galaxy KonzerthausJonathan Laperle Poster 22 A: Laniakea: A Galaxy-on-demand Provider Platform Through Cloud Technologies KonzerthausMarco Antonio Tangaro Poster 25 A: Building a Galaxy Trusted Server to Ensure Privacy and Ownership in Genomic Research KonzerthausGuokun Zhang Poster 28 A: InteractoMIX integration in Galaxy KonzerthausPatricia Mirela Bota Poster 31 A: Development and implementation of a Galaxy instance geared towards microbiological applications within an applied public health setting Konzerthaus Poster 34 A: A Newly Opened Galaxy Platform at Clermont Auvergne University KonzerthausNadia Goué Poster 37 A: Galaxy Genome Annotation Project: Easier Genome Annotation Using Galaxy and GMOD Tools KonzerthausAnthony Bretaudeau Poster 40 A: Aequatus.js: a plugin to visualise gene trees in Galaxy KonzerthausAnil S. Thanki Poster 43 A: Galaxy and Training: 2019 updates from the Galaxy Training Network KonzerthausBérénice Batut Poster 46 A: Galaxy-E project: 2019 news KonzerthausYvan Le Bras Poster 49 A: Mining hot topics in stem cells by combining text mining and scientometrics KonzerthausZhengyin Hu • Xiaomei Wang Poster 52 A: Poster: Science Data Center BioDATEN in relation to the Galaxy Community KonzerthausBjorn Gruning Session 4: Posters, Demos, and Sponsors Konzerthaus

15:00 CEST

Demo 01 A: Galaxy Computational Chemistry SpainChris Barnett Demo 03 A: Analysing and organising large-scale metabolome annotation studies with Django, ISA and Galaxy FranceThomas N. Lawson

15:25 CEST

Demo 02 A: Climate Analysis with Galaxy SpainAnne Fouilloux Demo 04 A: GalaxyCloudRunner: Streamlined Cloud Bursting for Galaxy FranceNuwan Goonasekera
 
Wednesday, July 3
 

14:50 CEST

Poster 14 B: Modulation of Nav1.5 mechanosensitivity by β1 and β3 subunits KonzerthausMichele Maroni Poster 02 B: Galaxy container for Hinxton Single Cell Interactive Analysis Portal (HiSciAP) KonzerthausJonathan Manning Poster 05 B: Improving Transcriptome Analysis with Molecular Indices and Galaxy KonzerthausBrad Langhorst Poster 08 B: Transposon Insertion Sequencing Analysis in Galaxy KonzerthausDelphine Lariviere Poster 11 B: LC-MS/MS tool and interactive visualizations integration on Galaxy Workflow4Metabolomics infrastructure KonzerthausRomain Dallet Poster 17 B: Analysis and visualization of the human cardiac myocyte epigenome using Galaxy KonzerthausRalf Gilsbach Poster 20 B: Testing and Visualizing the State of Galaxy Tools and Workflows KonzerthausMartin Čech Poster 23 B: Galaxy on Kubernetes: where we are and future challenges KonzerthausPablo Moreno Poster 26 B: RealTimeTools: Integrating, Customizing, and Accessing UI-based Tools in Galaxy KonzerthausDaniel Blankenberg Poster 29 B: ARIAWeb: a new web service for automated NMR structure calculation with ARIA KonzerthausFabien Mareuil Poster 32 B: The IRIDA Platform for Microbial Genomics KonzerthausAaron Petkau Poster 35 B: NanoGalaxy: A Galaxy toolkit and workflows for long-read sequencing KonzerthausWillem de Koning Poster 38 B: Visual Refinement of Genome Annotations with Apollo in a Community Environment KonzerthausNathan Dunn Poster 41 B: Training experience on “Data analysis and interpretation for clinical genomics” using Galaxy KonzerthausGianmauro Cuccuru Poster 44 B: A brief overview on how bilille is using Galaxy for sharing knowledge, computational resources & tools. KonzerthausLoïc Couderc Poster 47 B: Climate Analysis with Galaxy KonzerthausAnne Fouilloux Poster 50 B: Using Galaxy for Creation and Execution of Text Mining Workflows in the OpenMinTeD platform KonzerthausDimitrios Galanis Poster 53 B: UseGalaxy.eu: Community, Training, Infrastructure, and Users KonzerthausHelena Rasche Session 10: Posters, Demos, and Sponsors Konzerthaus

15:00 CEST

Demo 05 B: Combat-tb Workbench, A Customizable Platform For Variant Discovery And Annotation, Phylogeny Construction And Variant Prioritisation BelgiumZiphozakhe Mashologu Demo 07 B: Knockdown Effects of MAGOHB on Alternative Splicing Via RNA-Seq Analysis SpainGlory Basumata Demo 15 B: CWL in Galaxy, 2019-06 snapshot ItalyMichael R. Crusoe • John Chilton • Hervé Ménager

15:25 CEST

Demo 06 B: ProteoRE, a Galaxy-based platform for the annotation and the interpretation of proteomics data in biomedical research BelgiumFlorence Combes Demo 08 B: Tool Prediction in Galaxy Workflows using Deep Learning SpainAnup Kumar
 
Thursday, July 4
 

14:50 CEST

16: Poster, Demo, and Sponsor Session Konzerthaus Poster 03 C: Galaxy in fields, gardens and greenhouses for better seeds. KonzerthausMichael Faubladier • Camille Segard • Frederic Sapet Poster 06 C: miRGalaxy: Galaxy tool for miRNA Analysis of NGS datasets (sRNA-seq) KonzerthausIlias Glogovitis Poster 09 C: Development and Deployment of a Workflow for the Genomic Analysis of Campylobacter Jejuni KonzerthausJosé Antonio Barbero Aparicio Poster 12 C: Reproducible and accessible analysis of spatially resolved proteomics and metabolomics data KonzerthausMelanie Föll Poster 15 C: A new Galaxy Wrapper for MaxQuant KonzerthausDamian Glätzer Poster 18 C: Applying new model for predicting effects of gene variants in epigenetic regulators within Galaxy environment KonzerthausTamara Drljača Poster 21 C: Improved Reference Data Management in Galaxy: Towards a Plant Data Analysis Platform KonzerthausIgnacio Eguinoa Poster 24: Galaxy In A Large Scale Production Environment KonzerthausSascha Kastens Poster 27 C: Galaxy on Site: Flexibility without Tears KonzerthausArthur Eschenlauer Poster 30 C: Towards a platform for genomics medicine KonzerthausWolfgang Maier Poster 33 C: HiCExplorer 3: A toolbox for Hi-C data analysis KonzerthausJoachim Wolff Poster 36 C: EDAM: the ontology of bioinformatics operations, types of data, topics, and data formats (2019 update) KonzerthausMatúš Kalas Poster 39 C: Deployment of Genome Databases for Algae Using Galaxy Genome Annotation KonzerthausLoraine Guéguen Poster 42 C: Experience of Galaxy training at a biomedical institute KonzerthausMaria Doyle Poster 45 C: Galaxy-Bricks a Tool for Data Literacy and Scientific Approach Education in the Context of Citizen Science KonzerthausSimon Bénateau Poster 48 C: The ChemicalToolBox - Computational Chemistry in Galaxy KonzerthausSimon Bray Poster 51 C: How Usable is Galaxy? A Usability Evaluation of Galaxy KonzerthausNgoc-Huy Truong Poster 54 C: TrackFind: FAIR Search of Genomic Tracks KonzerthausRadmila Kompova

15:00 CEST

Demo 10 C: Interactive Galaxy Visualizations for Multi-omics Research SpainRay Sajulga Demo 12 C: Visual Refinement of Genome Annotations with Apollo in a Community Environment FranceNathan Dunn Demo 14 C: Galaxy on Kubernetes BelgiumThat Other Person • Enis Afgan • Alexandru Mahmoud • Nuwan Goonasekera

15:25 CEST

Demo 11 C: NanoGalaxy: A Galaxy toolkit and workflows for long-read sequencing SpainWillem de Koning Demo 13 C: The IRIDA Platform for Microbial Genomics FranceAaron Petkau
 
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Monday, July 1
Tuesday, July 2
Wednesday, July 3
Thursday, July 4
Friday, July 5
Saturday, July 6
Sunday, July 7
Monday, July 8
  • A. Training
  • B. Talks: Admin / Dev
  • B. Talks: Epigenetics
  • B. Talks: General
  • B. Talks: Outside the Genome & Community
  • B. Talks: Proteomics / Metabolomics
  • B. Talks: Transcriptomics / Genomics
  • B. Talks: Variation / Metagenomics / Assembly
  • C. Posters / Demos / Sponsors
  • D. Break / Social / Networking / Meal
  • E. Help
  • F. CollaborationFest: Core
  • G. CollaborationFest: Encore
    • Belgium
    Czechia
    France
    Germany
    Greece
    Italy
    Konzerthaus
    Offsite
    Spain
    University of Freiburg Compute Center