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GCC2019 has ended
The 2019 Galaxy Community Conference (GCC2019) was held in Freiburg, Germany, 1-8 July.  There was one day of training, three days of mixed meeting and training, and then two to four days of CollaborationFest.  The meeting featured joint & parallel sessions; invited, accepted, and lightning talks; poster and demo sessions; birds-of-a-feather meetups; social events; and training sessions every day.

Thanks to everyone who helped make GCC2019 a success!
avatar for Pablo Moreno

Pablo Moreno

EMBL-EBI European Bioinformatics Institute
Cambridge, England
Websitehttps://github.com/pcm32

My Friends

  • avatar for Jonathan Manning



Tuesday, July 2
 

08:59 CEST

Session 1: Opening Plenary GreeceBjorn Gruning

09:00 CEST

Welcome GreeceAnika Erxleben • Bjorn Gruning

09:10 CEST

Invited Talk: Evolution of X chromosome recognition during Drosophila Dosage Compensation GreeceClaudia Isabelle Keller Valsecchi

09:40 CEST

Galaxy Australia – inside the national vision of a data commons GreeceGareth Price

10:00 CEST

A Machine Learning Tool Suite for Galaxy GreeceJeremy Goecks

10:20 CEST

An Update on Galaxy Workflows: More Accessible, Expressive, Robust, and Scalable GreeceJohn Chilton • Marius van den Beek

10:30 CEST

Break / Sponsors Konzerthaus

10:59 CEST

Session 2: Administration & Development GreeceHelena Rasche

11:00 CEST

GalaxyCloudRunner: Streamlined Cloud Bursting for Galaxy GreeceNuwan Goonasekera

11:07 CEST

Laniakea: A Galaxy-on-demand Provider Platform Through Cloud Technologies GreeceMarco Antonio Tangaro

11:27 CEST

Enabling Single Sign-On for Multiple Galaxy Instances GreeceEnis Afgan

11:34 CEST

How – And How not – to manage successful local Galaxies deployments GreecePhilip Mabon

11:54 CEST

Building a Pulsar Network across Europe GreeceGianmauro Cuccuru

12:00 CEST

Lunch Konzerthaus

12:15 CEST

BoF: Using Galaxy in automated production setups ItalyPablo Moreno

13:20 CEST

Quality control of HTS data Germany

14:50 CEST

Poster 31 A: Development and implementation of a Galaxy instance geared towards microbiological applications within an applied public health setting Konzerthaus Poster 37 A: Galaxy Genome Annotation Project: Easier Genome Annotation Using Galaxy and GMOD Tools KonzerthausAnthony Bretaudeau

15:25 CEST

Demo 04 A: GalaxyCloudRunner: Streamlined Cloud Bursting for Galaxy FranceNuwan Goonasekera

15:50 CEST

Metatranscriptomics and multi-omics functional microbiome analysis BelgiumTimothy J. Griffin • Bérénice Batut • Ray Sajulga • Pratik Jagtap

17:20 CEST

Group Picture Konzerthaus

17:57 CEST

The LAPPS Grid/Galaxy Platform for Mining Scientific Publications GermanyAlexandru Mahmoud

19:00 CEST

The Freiburg City Tour BoF!FULL Offsite The Galaxy Training Network BoF! OffsiteSaskia Hiltemann • Bérénice Batut • Helena Rasche
 
Wednesday, July 3
 

09:00 CEST

Containerizing Galaxy server as a Singularity application on HPC clusters for GenAP GreeceDavid Morais

09:20 CEST

Galaxy on Kubernetes: where we are and future challenges GreecePablo Moreno

09:30 CEST

Single-cell RNA Analysis in Galaxy on 10X Datasets GermanyMehmet Tekman

09:47 CEST

CVMFS-CSI for Galaxy: Efficient Access to Read-only Data in Kubernetes GreeceAlexandru Mahmoud

09:50 CEST

Biology-driven classification of Single-Cells RNAseq data in Galaxy GermanyChristophe Antoniewski

10:14 CEST

Galaxy container for Hinxton Single Cell Interactive Analysis Portal (HiSciAP) GreeceJonathan Manning

10:30 CEST

Break / Sponsors Konzerthaus

11:00 CEST

Working Effectively with Remote Data in Galaxy - A Progress Report GreeceJohn Chilton

11:07 CEST

Testing and Visualizing the State of Galaxy Tools and Workflows GreeceMartin Čech

11:27 CEST

Setting up a Galaxy Platform in a HPC Infrastructure for Genomics Implementation into Diagnosis Routines for a Health Reference Center GreeceMiguel Juliá

11:34 CEST

RealTimeTools: Integrating, Customizing, and Accessing UI-based Tools in Galaxy GreeceDaniel Blankenberg

11:54 CEST

Creating a Universe of Galaxies: The UseGalaxy.* Project GreeceNate Coraor

12:15 CEST

EOSC-Life roadmap BOF SpainJean-Karim Heriche

13:20 CEST

Galaxy Code Architecture GreeceJohn Chilton • Nate Coraor

14:50 CEST

Poster 02 B: Galaxy container for Hinxton Single Cell Interactive Analysis Portal (HiSciAP) KonzerthausJonathan Manning Poster 05 B: Improving Transcriptome Analysis with Molecular Indices and Galaxy KonzerthausBrad Langhorst Poster 20 B: Testing and Visualizing the State of Galaxy Tools and Workflows KonzerthausMartin Čech Poster 23 B: Galaxy on Kubernetes: where we are and future challenges KonzerthausPablo Moreno Poster 32 B: The IRIDA Platform for Microbial Genomics KonzerthausAaron Petkau Poster 50 B: Using Galaxy for Creation and Execution of Text Mining Workflows in the OpenMinTeD platform KonzerthausDimitrios Galanis

15:25 CEST

Demo 06 B: ProteoRE, a Galaxy-based platform for the annotation and the interpretation of proteomics data in biomedical research BelgiumFlorence Combes Demo 08 B: Tool Prediction in Galaxy Workflows using Deep Learning SpainAnup Kumar

15:50 CEST

Running Galaxy on Kubernetes GreecePablo Moreno • That Other Person • Enis Afgan • Nuwan Goonasekera • Alexandru Mahmoud

17:29 CEST

Session 12: Plenary GreeceFrederik Coppens

17:30 CEST

Invited Talk: Galaxy Community Update GreeceAnton Nekrutenko • James Taylor

18:00 CEST

Tool Prediction in Galaxy Workflows using Deep Learning GreeceAnup Kumar

18:07 CEST

Street Science Community: make science tangible & accessible by bringing it to the “street” with open science workshops GreeceTeresa Müller

19:30 CEST

Conference Dinner Offsite
 
Thursday, July 4
 

09:00 CEST

Invited Talk: Data visualisation by citizen science participants: the case of birds and bats monitoring schemes and Galaxy-E GermanyYves Bas • Romain Lorrillière

09:20 CEST

Interactive Galaxy Visualizations for Multi-omics Research GreeceRay Sajulga

09:27 CEST

ProteoRE, a Galaxy-based platform for the annotation and the interpretation of proteomics data in biomedical research GreeceFlorence Combes

09:44 CEST

Galaxy-E project: 2019 news GermanyYvan Le Bras

09:47 CEST

Galaxy Wrapper for MaxQuant GreeceDamian Glätzer

10:25 CEST

Galaxy Publication Library GermanyDave Clements

11:00 CEST

The IRIDA Platform for Microbial Genomics GermanyAaron Petkau

11:20 CEST

Combat-tb Workbench, A Customizable Platform For Variant Discovery And Annotation, Phylogeny Construction And Variant Prioritisation GermanyZiphozakhe Mashologu

11:47 CEST

NanoGalaxy: A Galaxy toolkit and workflows for long-read sequencing GermanyWillem de Koning

12:00 CEST

Lunch Konzerthaus

12:15 CEST

Galaxy containers BoF FranceEnis Afgan • Bjorn Gruning • Marius van den Beek • Nuwan Goonasekera • Pablo Moreno

13:20 CEST

CVMFS and Pulsar GreeceSimon Gladman • Nate Coraor • Gianmauro Cuccuru • Helena Rasche
 

My Moderators Sessions

Tuesday, July 2
 

12:15 CEST

BoF: Using Galaxy in automated production setups ItalyPablo Moreno
 
Thursday, July 4
 

12:15 CEST

Galaxy containers BoF FranceEnis Afgan • Bjorn Gruning • Marius van den Beek • Nuwan Goonasekera • Pablo Moreno