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GCC2019
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Saved To My Sched
The 2019
Galaxy Community Conference (GCC2019)
was held in Freiburg, Germany, 1-8 July. There was
one day of training
,
three days of mixed meeting and training
, and then
two to four days of CollaborationFest
. The meeting featured joint & parallel sessions; invited, accepted, and lightning talks;
poster
and
demo
sessions;
birds-of-a-feather meetups
;
social events
; and training sessions every day.
Thanks to everyone who helped make GCC2019 a success!
Schedule
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A. Training
All
Admin / Dev
Diverse Communities
Epigenetics
Introduction / General
Metagenomics / Assembly
Proteomics / Metabolomics
Transciptomics / Genome Variation
B. Talks: Admin / Dev
All
Session 2
Session 7
Session 8
B. Talks: Epigenetics
All
Session 6
B. Talks: General
B. Talks: Outside the Genome & Community
All
Session 13
Session 2
Session 6
B. Talks: Proteomics / Metabolomics
All
Session 13
Session 14
B. Talks: Transcriptomics / Genomics
All
Session 7
Session 8
B. Talks: Variation / Metagenomics / Assembly
All
Session 14
C. Posters / Demos / Sponsors
All
Demos
Posters
Sponsors
D. Break / Social / Networking / Meal
All
BoFs
Break
Demos
Meal
Sponsors
E. Help
F. CollaborationFest: Core
G. CollaborationFest: Encore
Luke Sargent
Oregon Health and Science University (OHSU)
PDX-USA-Earth-Milky Way-Prime Material Plane
Monday
, July 1
10:00 CEST
Introduction to Galaxy Administration I
Greece
Martin Čech • Enis Afgan • Simon Gladman • Marius van den Beek • John Chilton • Nate Coraor • Helena Rasche
12:00 CEST
Lunch
Konzerthaus
15:00 CEST
Break
Konzerthaus
15:30 CEST
Introduction to Galaxy Administration III
Greece
Enis Afgan • Simon Gladman • Martin Čech • John Chilton • Nate Coraor • Helena Rasche
18:00 CEST
Genome Annotation BoF
Offsite
Nathan Dunn • Helena Rasche
Tuesday
, July 2
08:59 CEST
Session 1: Opening Plenary
Greece
Björn Grüning
09:00 CEST
Welcome
Greece
Anika Erxleben • Björn Grüning
09:10 CEST
Invited Talk: Evolution of X chromosome recognition during Drosophila Dosage Compensation
Greece
Claudia Isabelle Keller Valsecchi
09:40 CEST
Galaxy Australia – inside the national vision of a data commons
Greece
Gareth Price
10:00 CEST
A Machine Learning Tool Suite for Galaxy
Greece
Jeremy Goecks
10:20 CEST
An Update on Galaxy Workflows: More Accessible, Expressive, Robust, and Scalable
Greece
John Chilton • Marius van den Beek
10:30 CEST
Break / Sponsors
Konzerthaus
12:15 CEST
Arts & Crafts
Czechia
Saskia Hiltemann • Helena Rasche
13:19 CEST
Session 3: Training
Konzerthaus
15:00 CEST
Demo 01 A: Galaxy Computational Chemistry
Spain
Chris Barnett
15:25 CEST
Demo 02 A: Climate Analysis with Galaxy
Spain
Anne Fouilloux
15:49 CEST
Session 5: Training
Konzerthaus
15:50 CEST
Machine Learning with Galaxy - Predict age from RNA-seq dataset
Germany
Alireza Khanteymoori • Jeremy Goecks • Anup Kumar
17:20 CEST
Group Picture
Konzerthaus
18:17 CEST
Infrastructure for Healthier Living: Galaxy at Quadram Institute Bioscience
Germany
Thanh Le Viet
18:24 CEST
How Usable is Galaxy? A Usability Evaluation of Galaxy
Germany
Ngoc-Huy Truong
19:00 CEST
The Freiburg City Tour BoF!
Offsite
FULL
Wednesday
, July 3
09:00 CEST
Containerizing Galaxy server as a Singularity application on HPC clusters for GenAP
Greece
David Morais
09:20 CEST
Galaxy on Kubernetes: where we are and future challenges
Greece
Pablo Moreno
09:40 CEST
A Minimal Docker Image for Galaxy
Greece
Sergey Golitsynskiy
09:47 CEST
CVMFS-CSI for Galaxy: Efficient Access to Read-only Data in Kubernetes
Greece
Alexandru Mahmoud
09:54 CEST
gxadmin: usegalaxy.* administration wisdom
Greece
Helena Rasche
10:14 CEST
Galaxy container for Hinxton Single Cell Interactive Analysis Portal (HiSciAP)
Greece
Jonathan Manning
10:59 CEST
Session 8: Transcriptomics & Genomics Track
Germany
Anshu Bhardwaj
11:00 CEST
Aequatus.js: a plugin to visualise gene trees in Galaxy
Germany
Anil S. Thanki
11:20 CEST
Visual Refinement of Genome Annotations with Apollo in a Community Environment
Germany
Nathan Dunn
11:27 CEST
Architectural and Systems Improvements to G-OnRamp, a Collaborative Eukaryotic Genome Annotation Platform
Germany
Luke Sargent
12:00 CEST
Lunch
Konzerthaus
12:15 CEST
Arts & Crafts
Czechia
Saskia Hiltemann • Helena Rasche
13:19 CEST
Session 9: Training
Konzerthaus
13:20 CEST
Galaxy Code Architecture
Greece
John Chilton • Nate Coraor
15:50 CEST
Running Galaxy on Kubernetes
Greece
Pablo Moreno • Sergey Golitsynskiy • Enis Afgan • Nuwan Goonasekera • Alexandru Mahmoud
17:29 CEST
Session 12: Plenary
Greece
Frederik Coppens
17:30 CEST
Invited Talk: Galaxy Community Update
Greece
Anton Nekrutenko • James Taylor
18:07 CEST
Street Science Community: make science tangible & accessible by bringing it to the “street” with open science workshops
Greece
Teresa Müller
19:30 CEST
Conference Dinner
Offsite
Thursday
, July 4
17:29 CEST
Session 18: Closing Plenary
Greece
Andrew Lonie
17:30 CEST
Invited Talk: UseGalaxy: Elucidating chromatin biology of mouse cardiomyocytes
Greece
Stephan Nothjunge
Timezone
GCC2019
Europe/Berlin
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A. Training
All
Admin / Dev
Diverse Communities
Epigenetics
Introduction / General
Metagenomics / Assembly
Proteomics / Metabolomics
Transciptomics / Genome Variation
B. Talks: Admin / Dev
All
Session 2
Session 7
Session 8
B. Talks: Epigenetics
All
Session 6
B. Talks: General
B. Talks: Outside the Genome & Community
All
Session 13
Session 2
Session 6
B. Talks: Proteomics / Metabolomics
All
Session 13
Session 14
B. Talks: Transcriptomics / Genomics
All
Session 7
Session 8
B. Talks: Variation / Metagenomics / Assembly
All
Session 14
C. Posters / Demos / Sponsors
All
Demos
Posters
Sponsors
D. Break / Social / Networking / Meal
All
BoFs
Break
Demos
Meal
Sponsors
E. Help
F. CollaborationFest: Core
G. CollaborationFest: Encore
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