Sched.com Conference Mobile Apps
GCC2019
has ended
Create Your Own Event
Menu
Schedule
Speakers
Sponsors
Attendees
Info
Map
Search
Log in
Sign up
GCC2019
-
Saved To My Sched
The 2019
Galaxy Community Conference (GCC2019)
was held in Freiburg, Germany, 1-8 July. There was
one day of training
,
three days of mixed meeting and training
, and then
two to four days of CollaborationFest
. The meeting featured joint & parallel sessions; invited, accepted, and lightning talks;
poster
and
demo
sessions;
birds-of-a-feather meetups
;
social events
; and training sessions every day.
Thanks to everyone who helped make GCC2019 a success!
Schedule
Simple
Expanded
Grid
By Venue
Speakers
Sponsors
Attendees
Info
Map
Search
or browse by date + venue
A. Training
All
Admin / Dev
Diverse Communities
Epigenetics
Introduction / General
Metagenomics / Assembly
Proteomics / Metabolomics
Transciptomics / Genome Variation
B. Talks: Admin / Dev
All
Session 2
Session 7
Session 8
B. Talks: Epigenetics
All
Session 6
B. Talks: General
B. Talks: Outside the Genome & Community
All
Session 13
Session 2
Session 6
B. Talks: Proteomics / Metabolomics
All
Session 13
Session 14
B. Talks: Transcriptomics / Genomics
All
Session 7
Session 8
B. Talks: Variation / Metagenomics / Assembly
All
Session 14
C. Posters / Demos / Sponsors
All
Demos
Posters
Sponsors
D. Break / Social / Networking / Meal
All
BoFs
Break
Demos
Meal
Sponsors
E. Help
F. CollaborationFest: Core
G. CollaborationFest: Encore
Sergey Golitsynskiy
Johns Hopkins University
software engineer
Baltimore, MD
Monday
, July 1
10:00 CEST
Introduction to Using Galaxy (Galaxy 101)
Germany
Mo Heydarian • Jennifer Hillman-Jackson
13:00 CEST
Beyond the Intro: Further Adventures in Using Galaxy
Germany
Mo Heydarian • Jennifer Hillman-Jackson
15:30 CEST
Analyzing Large / Complex Experimental Designs with Galaxy
Germany
Dan Blankenberg • Marius van den Beek • Mo Heydarian • Jennifer Hillman-Jackson
18:00 CEST
Birds-of-a-Feather (BoFs), with Your Dinner!
Offsite
Genome Annotation BoF
Offsite
Nathan Dunn • Helena Rasche
Tuesday
, July 2
08:59 CEST
Session 1: Opening Plenary
Greece
Björn Grüning
09:00 CEST
Welcome
Greece
Anika Erxleben • Björn Grüning
09:40 CEST
Galaxy Australia – inside the national vision of a data commons
Greece
Gareth Price
10:00 CEST
A Machine Learning Tool Suite for Galaxy
Greece
Jeremy Goecks
10:20 CEST
An Update on Galaxy Workflows: More Accessible, Expressive, Robust, and Scalable
Greece
John Chilton • Marius van den Beek
10:59 CEST
Session 2: Administration & Development
Greece
Helena Rasche
11:00 CEST
GalaxyCloudRunner: Streamlined Cloud Bursting for Galaxy
Greece
Nuwan Goonasekera
11:07 CEST
Laniakea: A Galaxy-on-demand Provider Platform Through Cloud Technologies
Greece
Marco Antonio Tangaro
11:27 CEST
Enabling Single Sign-On for Multiple Galaxy Instances
Greece
Enis Afgan
11:34 CEST
How – And How not – to manage successful local Galaxies deployments
Greece
Philip Mabon
11:40 CEST
Galaxy Image Analysis: Web-based microscopy image analysis and cellular phenotyping
Germany
Thomas Wollmann
11:54 CEST
Building a Pulsar Network across Europe
Greece
Gianmauro Cuccuru
12:15 CEST
BoF: Using Galaxy in automated production setups
Italy
Pablo Moreno
13:20 CEST
How to create a Galaxy Tool
Greece
John Chilton • Nicola Soranzo
15:50 CEST
Scripting Galaxy through BioBlend
Greece
Marius van den Beek • Nicola Soranzo
17:30 CEST
Using Galaxy for Creation and Execution of Text Mining Workflows in the OpenMinTeD platform
Germany
Dimitrios Galanis
17:50 CEST
To Better Benefit from Shared Tasks in Biomedical Text Mining
Germany
Mouhamadou Ba
17:57 CEST
The LAPPS Grid/Galaxy Platform for Mining Scientific Publications
Germany
Alexandru Mahmoud
18:24 CEST
How Usable is Galaxy? A Usability Evaluation of Galaxy
Germany
Ngoc-Huy Truong
Wednesday
, July 3
09:00 CEST
Containerizing Galaxy server as a Singularity application on HPC clusters for GenAP
Greece
David Morais
09:20 CEST
Galaxy on Kubernetes: where we are and future challenges
Greece
Pablo Moreno
09:40 CEST
A Minimal Docker Image for Galaxy
Greece
Sergey Golitsynskiy
09:47 CEST
CVMFS-CSI for Galaxy: Efficient Access to Read-only Data in Kubernetes
Greece
Alexandru Mahmoud
09:54 CEST
gxadmin: usegalaxy.* administration wisdom
Greece
Helena Rasche
10:14 CEST
Galaxy container for Hinxton Single Cell Interactive Analysis Portal (HiSciAP)
Greece
Jonathan Manning
11:00 CEST
Working Effectively with Remote Data in Galaxy - A Progress Report
Greece
John Chilton
11:07 CEST
Testing and Visualizing the State of Galaxy Tools and Workflows
Greece
Martin Čech
11:27 CEST
Setting up a Galaxy Platform in a HPC Infrastructure for Genomics Implementation into Diagnosis Routines for a Health Reference Center
Greece
Miguel Juliá
11:34 CEST
RealTimeTools: Integrating, Customizing, and Accessing UI-based Tools in Galaxy
Greece
Dan Blankenberg
11:54 CEST
Creating a Universe of Galaxies: The UseGalaxy.* Project
Greece
Nate Coraor
12:15 CEST
BoF: Galactic Visualisation!
Italy
Saskia Hiltemann • Helena Rasche • Anil S. Thanki
13:20 CEST
Galaxy Code Architecture
Greece
John Chilton • Nate Coraor
15:50 CEST
Running Galaxy on Kubernetes
Greece
Pablo Moreno • Sergey Golitsynskiy • Enis Afgan • Nuwan Goonasekera • Alexandru Mahmoud
17:30 CEST
Invited Talk: Galaxy Community Update
Greece
Anton Nekrutenko • James Taylor
Thursday
, July 4
09:00 CEST
Invited Talk: Data visualisation by citizen science participants: the case of birds and bats monitoring schemes and Galaxy-E
Germany
Yves Bas • Romain Lorrillière
10:11 CEST
Improved Reference Data Management in Galaxy: Towards a Plant Data Analysis Platform
Germany
Ignacio Eguinoa
11:00 CEST
Analysing and organising large-scale metabolome annotation studies with Django, ISA and Galaxy
Greece
Thomas N. Lawson
11:27 CEST
High throughput HIV next generation sequence analysis in Galaxy
Germany
Dave Bouvier
11:47 CEST
NanoGalaxy: A Galaxy toolkit and workflows for long-read sequencing
Germany
Willem de Koning
12:15 CEST
Galaxy containers BoF
France
Enis Afgan • Björn Grüning • Marius van den Beek • Nuwan Goonasekera • Pablo Moreno
13:20 CEST
CVMFS and Pulsar
Greece
Simon Gladman • Nate Coraor • Gianmauro Cuccuru • Helena Rasche
19:00 CEST
Intergalactic Utilities Commission (IUC) BoF
Offsite
Björn Grüning • Marius van den Beek • John Chilton • Nicola Soranzo • Saskia Hiltemann • Bérénice Batut • Dan Blankenberg • Helena Rasche
Friday
, July 5
09:00 CEST
CollaborationFest: Core
Konzerthaus
Saturday
, July 6
09:00 CEST
CollaborationFest: Core
Konzerthaus
Sunday
, July 7
09:00 CEST
CollaborationFest: Encore
University of Freiburg Compute Center
Monday
, July 8
09:00 CEST
CollaborationFest: Encore
University of Freiburg Compute Center
Timezone
GCC2019
Europe/Berlin
Filter By Date
GCC2019
Jul 1
-
8, 2019
July 2019
Sun
Mon
Tue
Wed
Thu
Fri
Sat
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
Filter By Venue
Freiburg, Germany
Sort schedule by Venue
Belgium
Czechia
France
Germany
Greece
Italy
Konzerthaus
Offsite
Spain
University of Freiburg Compute Center
Filter By Type
A. Training
All
Admin / Dev
Diverse Communities
Epigenetics
Introduction / General
Metagenomics / Assembly
Proteomics / Metabolomics
Transciptomics / Genome Variation
B. Talks: Admin / Dev
All
Session 2
Session 7
Session 8
B. Talks: Epigenetics
All
Session 6
B. Talks: General
B. Talks: Outside the Genome & Community
All
Session 13
Session 2
Session 6
B. Talks: Proteomics / Metabolomics
All
Session 13
Session 14
B. Talks: Transcriptomics / Genomics
All
Session 7
Session 8
B. Talks: Variation / Metagenomics / Assembly
All
Session 14
C. Posters / Demos / Sponsors
All
Demos
Posters
Sponsors
D. Break / Social / Networking / Meal
All
BoFs
Break
Demos
Meal
Sponsors
E. Help
F. CollaborationFest: Core
G. CollaborationFest: Encore
Recently Active Attendees
Dave Clements
R
rimmfus
Yvan Le Bras
R
rimmfuss
Enis Afgan
S
SoK
Shivani Sharma
Matúš Kalaš
More →