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GCC2019 has ended
The 2019 Galaxy Community Conference (GCC2019) was held in Freiburg, Germany, 1-8 July.  There was one day of training, three days of mixed meeting and training, and then two to four days of CollaborationFest.  The meeting featured joint & parallel sessions; invited, accepted, and lightning talks; poster and demo sessions; birds-of-a-feather meetups; social events; and training sessions every day.

Thanks to everyone who helped make GCC2019 a success!
avatar for Sergey Golitsynskiy

Sergey Golitsynskiy

Johns Hopkins University
software engineer
Baltimore, MD
Websitehttps://github.com/ic4f
Monday, July 1
 

10:00

Introduction to Using Galaxy (Galaxy 101) GermanyMo Heydarian • Jennifer Hillman-Jackson

13:00

Beyond the Intro: Further Adventures in Using Galaxy GermanyMo Heydarian • Jennifer Hillman-Jackson

15:30

Analyzing Large / Complex Experimental Designs with Galaxy GermanyDaniel Blankenberg • Marius van den Beek • Mo Heydarian • Jennifer Hillman-Jackson

18:00

Birds-of-a-Feather (BoFs), with Your Dinner! Offsite Genome Annotation BoF OffsiteNathan Dunn • Helena Rasche
 
Tuesday, July 2
 

08:59

Session 1: Opening Plenary GreeceBjörn Grüning

09:00

Welcome GreeceAnika Erxleben • Björn Grüning

09:40

Galaxy Australia – inside the national vision of a data commons GreeceGareth Price

10:00

A Machine Learning Tool Suite for Galaxy GreeceJeremy Goecks

10:20

An Update on Galaxy Workflows: More Accessible, Expressive, Robust, and Scalable GreeceJohn Chilton • Marius van den Beek

10:59

Session 2: Administration & Development GreeceHelena Rasche

11:00

GalaxyCloudRunner: Streamlined Cloud Bursting for Galaxy GreeceNuwan Goonasekera

11:07

Laniakea: A Galaxy-on-demand Provider Platform Through Cloud Technologies GreeceMarco Antonio Tangaro

11:27

Enabling Single Sign-On for Multiple Galaxy Instances GreeceEnis Afgan

11:34

How – And How not – to manage successful local Galaxies deployments GreecePhilip Mabon

11:40

Galaxy Image Analysis: Web-based microscopy image analysis and cellular phenotyping GermanyThomas Wollmann

11:54

Building a Pulsar Network across Europe GreeceGianmauro Cuccuru

12:15

BoF: Using Galaxy in automated production setups ItalyPablo Moreno

13:20

How to create a Galaxy Tool GreeceJohn Chilton • Nicola Soranzo

15:50

Scripting Galaxy through BioBlend GreeceMarius van den Beek • Nicola Soranzo

17:30

Using Galaxy for Creation and Execution of Text Mining Workflows in the OpenMinTeD platform GermanyDimitrios Galanis

17:50

To Better Benefit from Shared Tasks in Biomedical Text Mining GermanyMouhamadou Ba

17:57

The LAPPS Grid/Galaxy Platform for Mining Scientific Publications GermanyAlexandru Mahmoud

18:24

How Usable is Galaxy? A Usability Evaluation of Galaxy GermanyNgoc-Huy Truong
 
Wednesday, July 3
 

09:00

Containerizing Galaxy server as a Singularity application on HPC clusters for GenAP GreeceDavid Morais

09:20

Galaxy on Kubernetes: where we are and future challenges GreecePablo Moreno

09:40

A Minimal Docker Image for Galaxy GreeceSergey Golitsynskiy

09:47

CVMFS-CSI for Galaxy: Efficient Access to Read-only Data in Kubernetes GreeceAlexandru Mahmoud

09:54

gxadmin: usegalaxy.* administration wisdom GreeceHelena Rasche

10:14

Galaxy container for Hinxton Single Cell Interactive Analysis Portal (HiSciAP) GreeceJonathan Manning

11:00

Working Effectively with Remote Data in Galaxy - A Progress Report GreeceJohn Chilton

11:07

Testing and Visualizing the State of Galaxy Tools and Workflows GreeceMartin Čech

11:27

Setting up a Galaxy Platform in a HPC Infrastructure for Genomics Implementation into Diagnosis Routines for a Health Reference Center GreeceMiguel Juliá

11:34

RealTimeTools: Integrating, Customizing, and Accessing UI-based Tools in Galaxy GreeceDaniel Blankenberg

11:54

Creating a Universe of Galaxies: The UseGalaxy.* Project GreeceNate Coraor

12:15

BoF: Galactic Visualisation! ItalySaskia Hiltemann • Helena Rasche • Anil S. Thanki

13:20

Galaxy Code Architecture GreeceJohn Chilton • Nate Coraor

15:50

Running Galaxy on Kubernetes GreecePablo Moreno • Sergey Golitsynskiy • Enis Afgan • Nuwan Goonasekera • Alexandru Mahmoud

17:30

Invited Talk: Galaxy Community Update GreeceAnton Nekrutenko • James Taylor
 
Thursday, July 4
 

09:00

Invited Talk: Data visualisation by citizen science participants: the case of birds and bats monitoring schemes and Galaxy-E GermanyYves Bas • Romain Lorrillière

10:11

Improved Reference Data Management in Galaxy: Towards a Plant Data Analysis Platform GermanyIgnacio Eguinoa

11:00

Analysing and organising large-scale metabolome annotation studies with Django, ISA and Galaxy GreeceThomas N. Lawson

11:27

High throughput HIV next generation sequence analysis in Galaxy GermanyDave Bouvier

11:47

NanoGalaxy: A Galaxy toolkit and workflows for long-read sequencing GermanyWillem de Koning

12:15

Galaxy containers BoF FranceEnis Afgan • Björn Grüning • Marius van den Beek • Nuwan Goonasekera • Pablo Moreno

13:20

CVMFS and Pulsar GreeceSimon Gladman • Nate Coraor • Gianmauro Cuccuru • Helena Rasche

19:00

Intergalactic Utilities Commission (IUC) BoF OffsiteBjörn Grüning • Marius van den Beek • John Chilton • Nicola Soranzo • Saskia Hiltemann • Bérénice Batut • Daniel Blankenberg • Helena Rasche
 
Friday, July 5
 

09:00

CollaborationFest: Core Konzerthaus
 
Saturday, July 6
 

09:00

CollaborationFest: Core Konzerthaus
 
Sunday, July 7
 

09:00

CollaborationFest: Encore University of Freiburg Compute Center
 
Monday, July 8
 

09:00

CollaborationFest: Encore University of Freiburg Compute Center