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GCC2019 has ended
The 2019 Galaxy Community Conference (GCC2019) was held in Freiburg, Germany, 1-8 July.  There was one day of training, three days of mixed meeting and training, and then two to four days of CollaborationFest.  The meeting featured joint & parallel sessions; invited, accepted, and lightning talks; poster and demo sessions; birds-of-a-feather meetups; social events; and training sessions every day.

Thanks to everyone who helped make GCC2019 a success!
TD

Tamara Drljača

Institute of Nuclear Sciences VINCA
Research Trainee
tamara.drljaca@vin.bg.ac.rs
PhD student in Laboratory for Bioinformatics and Computational Chemistry, I mainly focus on genomic data analysis. Recipient of the GCC2019 Fellowship.
Monday, July 1
 

09:00 CEST

Beer Decoded, Here and Now! Italy Nanopore Loading Zone! Italy Conference Desk Open Konzerthaus

10:00 CEST

Introduction to Using Galaxy (Galaxy 101) GermanyMo Heydarian • Jennifer Hillman-Jackson

12:00 CEST

Lunch Konzerthaus

13:00 CEST

Beyond the Intro: Further Adventures in Using Galaxy GermanyMo Heydarian • Jennifer Hillman-Jackson

15:00 CEST

Break Konzerthaus

15:30 CEST

Analyzing Large / Complex Experimental Designs with Galaxy GermanyDaniel Blankenberg • Marius van den Beek • Mo Heydarian • Jennifer Hillman-Jackson

18:00 CEST

Genome Annotation BoF OffsiteNathan Dunn • Helena Rasche
 
Tuesday, July 2
 

08:59 CEST

Session 1: Opening Plenary GreeceBjorn Gruning

09:00 CEST

Welcome GreeceAnika Erxleben • Bjorn Gruning

09:10 CEST

Invited Talk: Evolution of X chromosome recognition during Drosophila Dosage Compensation GreeceClaudia Isabelle Keller Valsecchi

09:40 CEST

Galaxy Australia – inside the national vision of a data commons GreeceGareth Price

10:00 CEST

A Machine Learning Tool Suite for Galaxy GreeceJeremy Goecks

10:20 CEST

An Update on Galaxy Workflows: More Accessible, Expressive, Robust, and Scalable GreeceJohn Chilton • Marius van den Beek

10:30 CEST

Break / Sponsors Konzerthaus

11:54 CEST

Building a Pulsar Network across Europe GreeceGianmauro Cuccuru

12:00 CEST

Lunch Konzerthaus

12:15 CEST

Arts & Crafts CzechiaSaskia Hiltemann • Helena Rasche

13:20 CEST

EWAS data analysis for population epigenetics integrated into Galaxy - Epigenetics FranceKrzysztof Poterlowicz Variant calling I - from sequenced reads to variant lists SpainWolfgang Maier

15:50 CEST

Variant Calling II - causative variant discovery SpainWolfgang Maier

17:20 CEST

Group Picture Konzerthaus

17:29 CEST

Session 6: Outside the Genome & Community Track GermanyAnne Fouilloux

17:30 CEST

Using Galaxy for Creation and Execution of Text Mining Workflows in the OpenMinTeD platform GermanyDimitrios Galanis

17:50 CEST

To Better Benefit from Shared Tasks in Biomedical Text Mining GermanyMouhamadou Ba

17:57 CEST

The LAPPS Grid/Galaxy Platform for Mining Scientific Publications GermanyAlexandru Mahmoud

18:17 CEST

Infrastructure for Healthier Living: Galaxy at Quadram Institute Bioscience GermanyThanh Le Viet

18:24 CEST

How Usable is Galaxy? A Usability Evaluation of Galaxy GermanyNgoc-Huy Truong

19:00 CEST

The Freiburg City Tour BoF! OffsiteFULL
 
Wednesday, July 3
 

08:00 CEST

Conference Desk Open Konzerthaus

08:59 CEST

Session 7: Transcriptomics & Genomics Track GermanyAnna Syme

09:00 CEST

Invited Talk: Pou5f3, SoxB1 and Nanog control the Zygotic Genome Activation in Zebrafish by Chromatin Remodeling GermanyMarina Veil

09:30 CEST

Single-cell RNA Analysis in Galaxy on 10X Datasets GermanyMehmet Tekman

09:50 CEST

Biology-driven classification of Single-Cells RNAseq data in Galaxy GermanyChristophe Antoniewski

10:10 CEST

Improving Transcriptome Analysis with Molecular Indices and Galaxy GermanyBrad Langhorst

10:17 CEST

Transposon Insertion Sequencing Analysis in Galaxy GermanyDelphine Lariviere

10:30 CEST

Break / Sponsors Konzerthaus

10:59 CEST

Session 8: Transcriptomics & Genomics Track GermanyAnshu Bhardwaj

11:00 CEST

Aequatus.js: a plugin to visualise gene trees in Galaxy GermanyAnil S. Thanki

11:20 CEST

Visual Refinement of Genome Annotations with Apollo in a Community Environment GermanyNathan Dunn

11:54 CEST

Training experience on “Data analysis and interpretation for clinical genomics” using Galaxy GermanyGianmauro Cuccuru

12:00 CEST

Lunch Konzerthaus

13:20 CEST

Single cell RNA-seq analysis GermanyAlex Ostrovsky • Mehmet Tekman

15:25 CEST

Demo 06 B: ProteoRE, a Galaxy-based platform for the annotation and the interpretation of proteomics data in biomedical research BelgiumFlorence Combes

15:50 CEST

Single cell RNA-seq analysis II GermanyAlex Ostrovsky • Mehmet Tekman

17:29 CEST

Session 12: Plenary GreeceFrederik Coppens

17:30 CEST

Invited Talk: Galaxy Community Update GreeceAnton Nekrutenko • James Taylor

18:00 CEST

Tool Prediction in Galaxy Workflows using Deep Learning GreeceAnup Kumar

18:07 CEST

Street Science Community: make science tangible & accessible by bringing it to the “street” with open science workshops GreeceTeresa Müller

19:30 CEST

Conference Dinner Offsite
 
Thursday, July 4
 

08:59 CEST

Session 13: Proteomics & Metabolomics & Late Breaking Track GreeceMelanie Föll

09:00 CEST

Metaproteomics Powered By Metatranscriptomics: Towards a Multi-omic Functional Microbiome Analysis Within Galaxy GreecePratik Jagtap

09:20 CEST

Interactive Galaxy Visualizations for Multi-omics Research GreeceRay Sajulga

09:27 CEST

ProteoRE, a Galaxy-based platform for the annotation and the interpretation of proteomics data in biomedical research GreeceFlorence Combes

09:47 CEST

Galaxy Wrapper for MaxQuant GreeceDamian Glätzer

09:54 CEST

Application of Halogen Bonding in Molecular and Drug Design Facilitated by a Galaxy Webserver GreeceFrank M. Boeckler

10:14 CEST

Late Breaking Lightning Talks Greece

10:30 CEST

Break / Sponsors Konzerthaus

10:59 CEST

Session 14: Variation, Metagenomics & Assembly Track GermanySaskia Hiltemann

11:47 CEST

NanoGalaxy: A Galaxy toolkit and workflows for long-read sequencing GermanyWillem de Koning

11:54 CEST

MITOLINK: An integrated Web-based Workflow System to Evaluate Genotype-Phenotype Correlations in Human Mitochondrial Diseases GermanyAnshu Bhardwaj

12:00 CEST

Lunch Konzerthaus

12:15 CEST

Arts & Crafts CzechiaSaskia Hiltemann • Helena Rasche

13:20 CEST

Assembly, annotation and analysis of bacterial genomes ItalyDelphine Lariviere • Anna Syme

15:00 CEST

Demo 10 C: Interactive Galaxy Visualizations for Multi-omics Research SpainRay Sajulga

15:25 CEST

Demo 11 C: NanoGalaxy: A Galaxy toolkit and workflows for long-read sequencing SpainWillem de Koning

17:29 CEST

Session 18: Closing Plenary GreeceAndrew Lonie

17:30 CEST

Invited Talk: UseGalaxy: Elucidating chromatin biology of mouse cardiomyocytes GreeceStephan Nothjunge

18:00 CEST

Galaxy and Training: 2019 updates from the Galaxy Training Network GreeceBérénice Batut

18:20 CEST

Closing GreeceDave Clements • Bjorn Gruning • Anika Erxleben
 
Friday, July 5
 

08:00 CEST

Conference Desk Open Konzerthaus

09:00 CEST

CollaborationFest: Core Konzerthaus