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GCC2019 has ended
The 2019 Galaxy Community Conference (GCC2019) was held in Freiburg, Germany, 1-8 July.  There was one day of training, three days of mixed meeting and training, and then two to four days of CollaborationFest.  The meeting featured joint & parallel sessions; invited, accepted, and lightning talks; poster and demo sessions; birds-of-a-feather meetups; social events; and training sessions every day.

Thanks to everyone who helped make GCC2019 a success!
avatar for Wolfgang Maier

Wolfgang Maier

University of Freiburg
Member of the Galaxy Europe team
Freiburg, Germany
Websitehttps://usegalaxy-eu.github.io/freiburg/people
University of Freiburg
Monday, July 1
 

09:00 CEST

Conference Desk Open Konzerthaus

10:00 CEST

Introduction to Galaxy Administration I GreeceMartin Čech • Enis Afgan • Simon Gladman • Marius van den Beek • John Chilton • Nate Coraor • Helena Rasche

13:00 CEST

Introduction to Galaxy Administration II GreeceEnis Afgan • Simon Gladman • Martin Čech • Marius van den Beek • John Chilton • Nate Coraor • Helena Rasche

15:30 CEST

Introduction to Galaxy Administration III GreeceEnis Afgan • Simon Gladman • Martin Čech • John Chilton • Nate Coraor • Helena Rasche

18:00 CEST

Genome Annotation BoF OffsiteNathan Dunn • Helena Rasche
 
Tuesday, July 2
 

08:59 CEST

Session 1: Opening Plenary GreeceBjorn Gruning

09:00 CEST

Welcome GreeceAnika Erxleben • Bjorn Gruning

09:10 CEST

Invited Talk: Evolution of X chromosome recognition during Drosophila Dosage Compensation GreeceClaudia Isabelle Keller Valsecchi

09:40 CEST

Galaxy Australia – inside the national vision of a data commons GreeceGareth Price

10:00 CEST

A Machine Learning Tool Suite for Galaxy GreeceJeremy Goecks

10:20 CEST

An Update on Galaxy Workflows: More Accessible, Expressive, Robust, and Scalable GreeceJohn Chilton • Marius van den Beek

10:59 CEST

Session 2: Administration & Development GreeceHelena Rasche Session 2: Outside the Genome & Community Track GermanyYvan Le Bras

11:00 CEST

Galaxy Computational Chemistry GermanyChris Barnett

11:20 CEST

Climate Analysis with Galaxy GermanyAnne Fouilloux

11:27 CEST

Enabling Single Sign-On for Multiple Galaxy Instances GreeceEnis Afgan

11:34 CEST

How – And How not – to manage successful local Galaxies deployments GreecePhilip Mabon

11:40 CEST

Galaxy Image Analysis: Web-based microscopy image analysis and cellular phenotyping GermanyThomas Wollmann

11:54 CEST

Building a Pulsar Network across Europe GreeceGianmauro Cuccuru

12:15 CEST

BoF: Using Galaxy in automated production setups ItalyPablo Moreno

13:20 CEST

Variant calling I - from sequenced reads to variant lists SpainWolfgang Maier

14:50 CEST

Poster 16 A: Predicting Gene Expression from Histone Modifications and Chronological Age by RNA-Seq Data using Galaxy Machine Learning Tools KonzerthausAlireza Khanteymoori Poster 25 A: Building a Galaxy Trusted Server to Ensure Privacy and Ownership in Genomic Research KonzerthausGuokun Zhang Poster 31 A: Development and implementation of a Galaxy instance geared towards microbiological applications within an applied public health setting Konzerthaus Poster 37 A: Galaxy Genome Annotation Project: Easier Genome Annotation Using Galaxy and GMOD Tools KonzerthausAnthony Bretaudeau Poster 40 A: Aequatus.js: a plugin to visualise gene trees in Galaxy KonzerthausAnil S. Thanki Poster 52 A: Poster: Science Data Center BioDATEN in relation to the Galaxy Community KonzerthausBjorn Gruning

15:00 CEST

Demo 01 A: Galaxy Computational Chemistry SpainChris Barnett

15:50 CEST

Variant Calling II - causative variant discovery SpainWolfgang Maier

17:20 CEST

Group Picture Konzerthaus

17:30 CEST

Using Galaxy for Creation and Execution of Text Mining Workflows in the OpenMinTeD platform GermanyDimitrios Galanis

17:50 CEST

To Better Benefit from Shared Tasks in Biomedical Text Mining GermanyMouhamadou Ba

17:57 CEST

The LAPPS Grid/Galaxy Platform for Mining Scientific Publications GermanyAlexandru Mahmoud

18:17 CEST

Infrastructure for Healthier Living: Galaxy at Quadram Institute Bioscience GermanyThanh Le Viet

18:24 CEST

How Usable is Galaxy? A Usability Evaluation of Galaxy GermanyNgoc-Huy Truong

19:00 CEST

Galaxy Runners: Tuesday Edition OffsiteFlorian Eggenhofer • Anika Erxleben
 
Wednesday, July 3
 

08:00 CEST

Conference Desk Open Konzerthaus

09:30 CEST

Single-cell RNA Analysis in Galaxy on 10X Datasets GermanyMehmet Tekman

09:40 CEST

A Minimal Docker Image for Galaxy GreeceThat Other Person

09:47 CEST

CVMFS-CSI for Galaxy: Efficient Access to Read-only Data in Kubernetes GreeceAlexandru Mahmoud

09:54 CEST

gxadmin: usegalaxy.* administration wisdom GreeceHelena Rasche

10:10 CEST

Improving Transcriptome Analysis with Molecular Indices and Galaxy GermanyBrad Langhorst

10:17 CEST

Transposon Insertion Sequencing Analysis in Galaxy GermanyDelphine Lariviere

11:00 CEST

Working Effectively with Remote Data in Galaxy - A Progress Report GreeceJohn Chilton

11:07 CEST

Testing and Visualizing the State of Galaxy Tools and Workflows GreeceMartin Čech

11:20 CEST

Visual Refinement of Genome Annotations with Apollo in a Community Environment GermanyNathan Dunn

11:34 CEST

RealTimeTools: Integrating, Customizing, and Accessing UI-based Tools in Galaxy GreeceDaniel Blankenberg ChiRA: an integrated framework for Chimeric Read Annotation GermanyPavankumar Videm

11:54 CEST

Creating a Universe of Galaxies: The UseGalaxy.* Project GreeceNate Coraor Training experience on “Data analysis and interpretation for clinical genomics” using Galaxy GermanyGianmauro Cuccuru

12:15 CEST

BoF: Galactic Visualisation! ItalySaskia Hiltemann • Helena Rasche • Anil S. Thanki

13:20 CEST

Galaxy Code Architecture GreeceJohn Chilton • Nate Coraor Single cell RNA-seq analysis GermanyAlex Ostrovsky • Mehmet Tekman Train the Galaxy Trainer SpainSaskia Hiltemann • Helena Rasche • Simon Gladman • Bérénice Batut • Anna Syme

14:50 CEST

Poster 05 B: Improving Transcriptome Analysis with Molecular Indices and Galaxy KonzerthausBrad Langhorst Poster 08 B: Transposon Insertion Sequencing Analysis in Galaxy KonzerthausDelphine Lariviere Poster 20 B: Testing and Visualizing the State of Galaxy Tools and Workflows KonzerthausMartin Čech Poster 26 B: RealTimeTools: Integrating, Customizing, and Accessing UI-based Tools in Galaxy KonzerthausDaniel Blankenberg Poster 32 B: The IRIDA Platform for Microbial Genomics KonzerthausAaron Petkau Poster 38 B: Visual Refinement of Genome Annotations with Apollo in a Community Environment KonzerthausNathan Dunn Poster 41 B: Training experience on “Data analysis and interpretation for clinical genomics” using Galaxy KonzerthausGianmauro Cuccuru Poster 50 B: Using Galaxy for Creation and Execution of Text Mining Workflows in the OpenMinTeD platform KonzerthausDimitrios Galanis

15:00 CEST

Demo 05 B: Combat-tb Workbench, A Customizable Platform For Variant Discovery And Annotation, Phylogeny Construction And Variant Prioritisation BelgiumZiphozakhe Mashologu

15:25 CEST

Demo 08 B: Tool Prediction in Galaxy Workflows using Deep Learning SpainAnup Kumar

15:50 CEST

Visualisation development in Galaxy FranceAnup Kumar • Aysam Guerler • Jeremy Goecks

17:30 CEST

Invited Talk: Galaxy Community Update GreeceAnton Nekrutenko • James Taylor

18:00 CEST

Tool Prediction in Galaxy Workflows using Deep Learning GreeceAnup Kumar

18:07 CEST

Street Science Community: make science tangible & accessible by bringing it to the “street” with open science workshops GreeceTeresa Müller

19:30 CEST

Conference Dinner Offsite
 
Thursday, July 4
 

08:00 CEST

Conference Desk Open Konzerthaus

09:00 CEST

Metaproteomics Powered By Metatranscriptomics: Towards a Multi-omic Functional Microbiome Analysis Within Galaxy GreecePratik Jagtap

09:20 CEST

Interactive Galaxy Visualizations for Multi-omics Research GreeceRay Sajulga

09:47 CEST

Galaxy Wrapper for MaxQuant GreeceDamian Glätzer

10:04 CEST

The ChemicalToolBox - Computational Chemistry in Galaxy GermanySimon Bray

10:11 CEST

Improved Reference Data Management in Galaxy: Towards a Plant Data Analysis Platform GermanyIgnacio Eguinoa

10:18 CEST

Use Galaxy, Right Now! GermanyHelena Rasche • Dave Clements

10:25 CEST

Galaxy Publication Library GermanyDave Clements

11:00 CEST

The IRIDA Platform for Microbial Genomics GermanyAaron Petkau

11:20 CEST

Reproducible and accessible analysis of spatially resolved proteomics and metabolomics data GreeceMelanie Föll

11:27 CEST

High throughput HIV next generation sequence analysis in Galaxy GermanyDave Bouvier

11:54 CEST

MITOLINK: An integrated Web-based Workflow System to Evaluate Genotype-Phenotype Correlations in Human Mitochondrial Diseases GermanyAnshu Bhardwaj

12:15 CEST

Galaxy containers BoF FranceEnis Afgan • Bjorn Gruning • Marius van den Beek • Nuwan Goonasekera • Pablo Moreno

13:20 CEST

CVMFS and Pulsar GreeceSimon Gladman • Nate Coraor • Gianmauro Cuccuru • Helena Rasche

14:50 CEST

Poster 03 C: Galaxy in fields, gardens and greenhouses for better seeds. KonzerthausMichael Faubladier • Camille Segard • Frederic Sapet Poster 06 C: miRGalaxy: Galaxy tool for miRNA Analysis of NGS datasets (sRNA-seq) KonzerthausIlias Glogovitis Poster 15 C: A new Galaxy Wrapper for MaxQuant KonzerthausDamian Glätzer Poster 30 C: Towards a platform for genomics medicine KonzerthausWolfgang Maier Poster 36 C: EDAM: the ontology of bioinformatics operations, types of data, topics, and data formats (2019 update) KonzerthausMatúš Kalas Poster 39 C: Deployment of Genome Databases for Algae Using Galaxy Genome Annotation KonzerthausLoraine Guéguen Poster 42 C: Experience of Galaxy training at a biomedical institute KonzerthausMaria Doyle Poster 51 C: How Usable is Galaxy? A Usability Evaluation of Galaxy KonzerthausNgoc-Huy Truong

15:00 CEST

Demo 10 C: Interactive Galaxy Visualizations for Multi-omics Research SpainRay Sajulga Demo 12 C: Visual Refinement of Genome Annotations with Apollo in a Community Environment FranceNathan Dunn Demo 14 C: Galaxy on Kubernetes BelgiumThat Other Person • Enis Afgan • Alexandru Mahmoud • Nuwan Goonasekera

15:25 CEST

Demo 13 C: The IRIDA Platform for Microbial Genomics FranceAaron Petkau

15:50 CEST

ELIXIR Galaxy AAI: Authentication and Authorisation Infrastructure ItalyKjetil Klepper

18:00 CEST

Galaxy and Training: 2019 updates from the Galaxy Training Network GreeceBérénice Batut

18:20 CEST

Closing GreeceDave Clements • Bjorn Gruning • Anika Erxleben

19:00 CEST

Galaxy Runners: Thursday Edition OffsiteFlorian Eggenhofer • Anika Erxleben Intergalactic Utilities Commission (IUC) BoF OffsiteBjorn Gruning • Marius van den Beek • John Chilton • Nicola Soranzo • Saskia Hiltemann • Bérénice Batut • Daniel Blankenberg • Helena Rasche
 
Friday, July 5
 

08:00 CEST

Conference Desk Open Konzerthaus

09:00 CEST

CollaborationFest: Core Konzerthaus
 
Saturday, July 6
 

08:00 CEST

Conference Desk Open Konzerthaus

09:00 CEST

CollaborationFest: Core Konzerthaus
 
Sunday, July 7
 

08:00 CEST

Conference Desk Open University of Freiburg Compute Center

09:00 CEST

CollaborationFest: Encore University of Freiburg Compute Center
 
Monday, July 8
 

08:00 CEST

Conference Desk Open University of Freiburg Compute Center

09:00 CEST

CollaborationFest: Encore University of Freiburg Compute Center