Loading…
GCC2019 has ended
The 2019 Galaxy Community Conference (GCC2019) was held in Freiburg, Germany, 1-8 July.  There was one day of training, three days of mixed meeting and training, and then two to four days of CollaborationFest.  The meeting featured joint & parallel sessions; invited, accepted, and lightning talks; poster and demo sessions; birds-of-a-feather meetups; social events; and training sessions every day.

Thanks to everyone who helped make GCC2019 a success!
avatar for Yvan Le Bras

Yvan Le Bras

French National Museum of Natural History
Research engineer
Concarneau, FRANCE
Websitepndb.fr
Monday, July 1
 

09:00 CEST

Beer Decoded, Here and Now! Italy Nanopore Loading Zone! Italy

10:00 CEST

Introduction to Using Galaxy (Galaxy 101) GermanyMo Heydarian • Jennifer Hillman-Jackson

13:00 CEST

Beyond the Intro: Further Adventures in Using Galaxy GermanyMo Heydarian • Jennifer Hillman-Jackson

15:30 CEST

Analyzing Large / Complex Experimental Designs with Galaxy GermanyDan Blankenberg • Marius van den Beek • Mo Heydarian • Jennifer Hillman-Jackson

18:00 CEST

The Computational Chemistry BoF OffsiteBjörn Grüning • Chris Barnett • Simon Bray
 
Tuesday, July 2
 

08:00 CEST

Conference Desk Open Konzerthaus

08:59 CEST

Session 1: Opening Plenary GreeceBjörn Grüning

09:00 CEST

Welcome GreeceAnika Erxleben • Björn Grüning

09:10 CEST

Invited Talk: Evolution of X chromosome recognition during Drosophila Dosage Compensation GreeceClaudia Isabelle Keller Valsecchi

09:40 CEST

Galaxy Australia – inside the national vision of a data commons GreeceGareth Price

10:00 CEST

A Machine Learning Tool Suite for Galaxy GreeceJeremy Goecks

10:20 CEST

An Update on Galaxy Workflows: More Accessible, Expressive, Robust, and Scalable GreeceJohn Chilton • Marius van den Beek

10:30 CEST

Break / Sponsors Konzerthaus

10:59 CEST

Session 2: Outside the Genome & Community Track GermanyYvan Le Bras

11:00 CEST

Galaxy Computational Chemistry GermanyChris Barnett

11:20 CEST

Climate Analysis with Galaxy GermanyAnne Fouilloux

11:40 CEST

Galaxy Image Analysis: Web-based microscopy image analysis and cellular phenotyping GermanyThomas Wollmann

12:00 CEST

Lunch Konzerthaus

12:15 CEST

BoF: Using Galaxy in automated production setups ItalyPablo Moreno

13:20 CEST

16S analysis with mothur BelgiumSaskia Hiltemann

14:50 CEST

Session 4: Posters, Demos, and Sponsors Konzerthaus

15:49 CEST

Session 5: Training Konzerthaus

17:29 CEST

Session 6: Outside the Genome & Community Track GermanyAnne Fouilloux

17:30 CEST

Using Galaxy for Creation and Execution of Text Mining Workflows in the OpenMinTeD platform GermanyDimitrios Galanis

17:50 CEST

To Better Benefit from Shared Tasks in Biomedical Text Mining GermanyMouhamadou Ba

17:57 CEST

The LAPPS Grid/Galaxy Platform for Mining Scientific Publications GermanyAlexandru Mahmoud

18:17 CEST

Infrastructure for Healthier Living: Galaxy at Quadram Institute Bioscience GermanyThanh Le Viet

18:24 CEST

How Usable is Galaxy? A Usability Evaluation of Galaxy GermanyNgoc-Huy Truong
 
Wednesday, July 3
 

09:00 CEST

Containerizing Galaxy server as a Singularity application on HPC clusters for GenAP GreeceDavid Morais

09:30 CEST

Single-cell RNA Analysis in Galaxy on 10X Datasets GermanyMehmet Tekman

09:50 CEST

Biology-driven classification of Single-Cells RNAseq data in Galaxy GermanyChristophe Antoniewski

09:54 CEST

gxadmin: usegalaxy.* administration wisdom GreeceHelena Rasche

11:00 CEST

Working Effectively with Remote Data in Galaxy - A Progress Report GreeceJohn Chilton

11:07 CEST

Testing and Visualizing the State of Galaxy Tools and Workflows GreeceMartin Čech

11:27 CEST

Setting up a Galaxy Platform in a HPC Infrastructure for Genomics Implementation into Diagnosis Routines for a Health Reference Center GreeceMiguel Juliá

11:34 CEST

RealTimeTools: Integrating, Customizing, and Accessing UI-based Tools in Galaxy GreeceDan Blankenberg

11:54 CEST

Creating a Universe of Galaxies: The UseGalaxy.* Project GreeceNate Coraor

12:15 CEST

BoF: Galactic Visualisation! ItalySaskia Hiltemann • Helena Rasche • Anil S. Thanki

13:20 CEST

Train the Galaxy Trainer SpainSaskia Hiltemann • Helena Rasche • Simon Gladman • Bérénice Batut • Anna Syme

15:50 CEST

Making your open source project awesome SpainBérénice Batut • Yo Yehudi

17:30 CEST

Invited Talk: Galaxy Community Update GreeceAnton Nekrutenko • James Taylor

18:00 CEST

Tool Prediction in Galaxy Workflows using Deep Learning GreeceAnup Kumar

18:07 CEST

Street Science Community: make science tangible & accessible by bringing it to the “street” with open science workshops GreeceTeresa Müller

19:30 CEST

Conference Dinner Offsite
 
Thursday, July 4
 

08:59 CEST

Session 13:Outside the Genome & Community Track GermanyBérénice Batut

09:00 CEST

Invited Talk: Data visualisation by citizen science participants: the case of birds and bats monitoring schemes and Galaxy-E GermanyYves Bas • Romain Lorrillière

09:30 CEST

Galaxy-Bricks a Tool for Data Literacy and Scientific Approach Education in the Context of Citizen Science GermanySimon Bénateau

09:37 CEST

CITIZEN SCIENCE PROJECT in ECOLOGY with the GALAXY-E PLATFORM GermanyBenjamin Yguel

09:44 CEST

Galaxy-E project: 2019 news GermanyYvan Le Bras

10:04 CEST

The ChemicalToolBox - Computational Chemistry in Galaxy GermanySimon Bray

10:11 CEST

Improved Reference Data Management in Galaxy: Towards a Plant Data Analysis Platform GermanyIgnacio Eguinoa

10:18 CEST

Use Galaxy, Right Now! GermanyHelena Rasche • Dave Clements

10:25 CEST

Galaxy Publication Library GermanyDave Clements

11:00 CEST

Analysing and organising large-scale metabolome annotation studies with Django, ISA and Galaxy GreeceThomas N. Lawson

11:20 CEST

Reproducible and accessible analysis of spatially resolved proteomics and metabolomics data GreeceMelanie Föll

11:40 CEST

Workflow4Metabolomics: an international computing infrastructure for Metabolomics GreeceMélanie Petera • Romain Dallet • Gildas Le Corguillé

13:20 CEST

Import, handle, visualize and analyze biodiversity data in Galaxy SpainYvan Le Bras • Simon Bénateau

15:50 CEST

Population genomics with RADseq SpainSimon Bénateau • Yvan Le Bras

17:30 CEST

Invited Talk: UseGalaxy: Elucidating chromatin biology of mouse cardiomyocytes GreeceStephan Nothjunge

18:00 CEST

Galaxy and Training: 2019 updates from the Galaxy Training Network GreeceBérénice Batut

18:20 CEST

Closing GreeceDave Clements • Björn Grüning • Anika Erxleben
 
Friday, July 5
 

09:00 CEST

CollaborationFest: Core Konzerthaus
 
Saturday, July 6
 

09:00 CEST

CollaborationFest: Core Konzerthaus
 

My Moderators Sessions

Tuesday, July 2
 

10:59 CEST

Session 2: Outside the Genome & Community Track GermanyYvan Le Bras