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GCC2019 has ended
The 2019 Galaxy Community Conference (GCC2019) was held in Freiburg, Germany, 1-8 July.  There was one day of training, three days of mixed meeting and training, and then two to four days of CollaborationFest.  The meeting featured joint & parallel sessions; invited, accepted, and lightning talks; poster and demo sessions; birds-of-a-feather meetups; social events; and training sessions every day.

Thanks to everyone who helped make GCC2019 a success!
avatar for Ziphozakhe Mashologu

Ziphozakhe Mashologu

UWC - South African National Bioinformatics Institute
Developer
Cape Town - South Africa
Websitesanbi.ac.za
South African National Bioinformatics Institute (SANBI)
Monday, July 1
 

09:00 CEST

Beer Decoded, Here and Now! Italy Conference Desk Open Konzerthaus

10:00 CEST

Introduction to Galaxy Administration I GreeceMartin Čech • Enis Afgan • Simon Gladman • Marius van den Beek • John Chilton • Nate Coraor • Helena Rasche

12:00 CEST

Lunch Konzerthaus

13:00 CEST

Introduction to Galaxy Administration II GreeceEnis Afgan • Simon Gladman • Martin Čech • Marius van den Beek • John Chilton • Nate Coraor • Helena Rasche

15:00 CEST

Break Konzerthaus

15:30 CEST

Introduction to Galaxy Administration III GreeceEnis Afgan • Simon Gladman • Martin Čech • John Chilton • Nate Coraor • Helena Rasche

18:00 CEST

Birds-of-a-Feather (BoFs), with Your Dinner! Offsite
 
Tuesday, July 2
 

08:00 CEST

Conference Desk Open Konzerthaus

08:59 CEST

Session 1: Opening Plenary GreeceBjorn Gruning

09:00 CEST

Welcome GreeceAnika Erxleben • Bjorn Gruning

09:10 CEST

Invited Talk: Evolution of X chromosome recognition during Drosophila Dosage Compensation GreeceClaudia Isabelle Keller Valsecchi

09:40 CEST

Galaxy Australia – inside the national vision of a data commons GreeceGareth Price

10:00 CEST

A Machine Learning Tool Suite for Galaxy GreeceJeremy Goecks

10:20 CEST

An Update on Galaxy Workflows: More Accessible, Expressive, Robust, and Scalable GreeceJohn Chilton • Marius van den Beek

10:30 CEST

Break / Sponsors Konzerthaus

10:59 CEST

Session 2: Administration & Development GreeceHelena Rasche

11:00 CEST

GalaxyCloudRunner: Streamlined Cloud Bursting for Galaxy GreeceNuwan Goonasekera

11:07 CEST

Laniakea: A Galaxy-on-demand Provider Platform Through Cloud Technologies GreeceMarco Antonio Tangaro

11:20 CEST

Climate Analysis with Galaxy GermanyAnne Fouilloux

11:27 CEST

Enabling Single Sign-On for Multiple Galaxy Instances GreeceEnis Afgan

11:34 CEST

How – And How not – to manage successful local Galaxies deployments GreecePhilip Mabon

11:40 CEST

Galaxy Image Analysis: Web-based microscopy image analysis and cellular phenotyping GermanyThomas Wollmann

12:00 CEST

Lunch Konzerthaus

12:15 CEST

BoF: Using Galaxy in automated production setups ItalyPablo Moreno

13:19 CEST

Session 3: Training Konzerthaus

13:20 CEST

ChIP-seq data analysis ItalyLeily Rabbani • Devon Ryan EWAS data analysis for population epigenetics integrated into Galaxy - Epigenetics FranceKrzysztof Poterlowicz Quality control of HTS data Germany Variant calling I - from sequenced reads to variant lists SpainWolfgang Maier

14:50 CEST

Session 4: Posters, Demos, and Sponsors Konzerthaus

15:00 CEST

Demo 03 A: Analysing and organising large-scale metabolome annotation studies with Django, ISA and Galaxy FranceThomas N. Lawson

15:25 CEST

Demo 04 A: GalaxyCloudRunner: Streamlined Cloud Bursting for Galaxy FranceNuwan Goonasekera

15:49 CEST

Session 5: Training Konzerthaus

15:50 CEST

Machine Learning with Galaxy - Predict age from RNA-seq dataset GermanyAlireza Khanteymoori • Jeremy Goecks • Anup Kumar Variant Calling II - causative variant discovery SpainWolfgang Maier

17:29 CEST

Session 6: Outside the Genome & Community Track GermanyAnne Fouilloux

17:30 CEST

Using Galaxy for Creation and Execution of Text Mining Workflows in the OpenMinTeD platform GermanyDimitrios Galanis

17:50 CEST

Histone Deacetylases 1/2 In Microglia Function During Development And Neurodegeneration GreeceMaximilian Frosch

17:57 CEST

Analysis and visualization of the human cardiac myocyte epigenome using Galaxy GreeceRalf Gilsbach

18:17 CEST

Infrastructure for Healthier Living: Galaxy at Quadram Institute Bioscience GermanyThanh Le Viet

18:24 CEST

How Usable is Galaxy? A Usability Evaluation of Galaxy GermanyNgoc-Huy Truong

19:00 CEST

The Freiburg City Tour BoF!FULL Offsite The Galaxy Training Network BoF! OffsiteSaskia Hiltemann • Bérénice Batut • Helena Rasche
 
Wednesday, July 3
 

08:00 CEST

Conference Desk Open Konzerthaus

08:59 CEST

Session 7: Administration & Development Track GreeceSimon Gladman

09:00 CEST

Containerizing Galaxy server as a Singularity application on HPC clusters for GenAP GreeceDavid Morais

09:20 CEST

Galaxy on Kubernetes: where we are and future challenges GreecePablo Moreno

09:30 CEST

Single-cell RNA Analysis in Galaxy on 10X Datasets GermanyMehmet Tekman

09:40 CEST

A Minimal Docker Image for Galaxy GreeceThat Other Person

09:47 CEST

CVMFS-CSI for Galaxy: Efficient Access to Read-only Data in Kubernetes GreeceAlexandru Mahmoud

09:50 CEST

Biology-driven classification of Single-Cells RNAseq data in Galaxy GermanyChristophe Antoniewski

09:54 CEST

gxadmin: usegalaxy.* administration wisdom GreeceHelena Rasche

10:30 CEST

Break / Sponsors Konzerthaus

10:59 CEST

Session 8: Administration & Development Track GreeceDavid Morais

11:00 CEST

Working Effectively with Remote Data in Galaxy - A Progress Report GreeceJohn Chilton

11:07 CEST

Testing and Visualizing the State of Galaxy Tools and Workflows GreeceMartin Čech

11:20 CEST

Visual Refinement of Genome Annotations with Apollo in a Community Environment GermanyNathan Dunn

11:27 CEST

Setting up a Galaxy Platform in a HPC Infrastructure for Genomics Implementation into Diagnosis Routines for a Health Reference Center GreeceMiguel Juliá

11:34 CEST

RealTimeTools: Integrating, Customizing, and Accessing UI-based Tools in Galaxy GreeceDaniel Blankenberg

11:54 CEST

Creating a Universe of Galaxies: The UseGalaxy.* Project GreeceNate Coraor

12:00 CEST

Lunch Konzerthaus

12:15 CEST

Birds-of-a-Feather (BoFs), with Lunch Konzerthaus BoF: Galactic Visualisation! ItalySaskia Hiltemann • Helena Rasche • Anil S. Thanki

13:19 CEST

Session 9: Training Konzerthaus

13:20 CEST

Galaxy Code Architecture GreeceJohn Chilton • Nate Coraor The RNA workbench, best practices for RNA and high-throughput sequencing bioinformatics in Galaxy - RNA and transcriptomics FranceJoerg Fallmann • Florian Eggenhofer Train the Galaxy Trainer SpainSaskia Hiltemann • Helena Rasche • Simon Gladman • Bérénice Batut • Anna Syme

14:50 CEST

Session 10: Posters, Demos, and Sponsors Konzerthaus

15:00 CEST

Demo 05 B: Combat-tb Workbench, A Customizable Platform For Variant Discovery And Annotation, Phylogeny Construction And Variant Prioritisation BelgiumZiphozakhe Mashologu

15:49 CEST

Session 11: Training Konzerthaus

15:50 CEST

Beyond the Intro: Further Adventures in Using Galaxy ItalyMo Heydarian • Jennifer Hillman-Jackson Making your open source project awesome SpainBérénice Batut • Yo Yehudi Running Galaxy on Kubernetes GreecePablo Moreno • That Other Person • Enis Afgan • Nuwan Goonasekera • Alexandru Mahmoud

17:29 CEST

Session 12: Plenary GreeceFrederik Coppens

17:30 CEST

Invited Talk: Galaxy Community Update GreeceAnton Nekrutenko • James Taylor

18:00 CEST

Tool Prediction in Galaxy Workflows using Deep Learning GreeceAnup Kumar

18:07 CEST

Street Science Community: make science tangible & accessible by bringing it to the “street” with open science workshops GreeceTeresa Müller

19:30 CEST

Conference Dinner Offsite
 
Thursday, July 4
 

08:00 CEST

Conference Desk Open Konzerthaus

08:59 CEST

Session 13:Outside the Genome & Community Track GermanyBérénice Batut

09:00 CEST

Metaproteomics Powered By Metatranscriptomics: Towards a Multi-omic Functional Microbiome Analysis Within Galaxy GreecePratik Jagtap

09:20 CEST

Interactive Galaxy Visualizations for Multi-omics Research GreeceRay Sajulga

09:27 CEST

ProteoRE, a Galaxy-based platform for the annotation and the interpretation of proteomics data in biomedical research GreeceFlorence Combes

09:30 CEST

Galaxy-Bricks a Tool for Data Literacy and Scientific Approach Education in the Context of Citizen Science GermanySimon Bénateau

09:37 CEST

CITIZEN SCIENCE PROJECT in ECOLOGY with the GALAXY-E PLATFORM GermanyBenjamin Yguel

09:44 CEST

Galaxy-E project: 2019 news GermanyYvan Le Bras

09:47 CEST

Galaxy Wrapper for MaxQuant GreeceDamian Glätzer

09:54 CEST

Application of Halogen Bonding in Molecular and Drug Design Facilitated by a Galaxy Webserver GreeceFrank M. Boeckler

10:04 CEST

The ChemicalToolBox - Computational Chemistry in Galaxy GermanySimon Bray

10:11 CEST

Improved Reference Data Management in Galaxy: Towards a Plant Data Analysis Platform GermanyIgnacio Eguinoa

10:18 CEST

Use Galaxy, Right Now! GermanyHelena Rasche • Dave Clements

10:25 CEST

Galaxy Publication Library GermanyDave Clements

10:30 CEST

Break / Sponsors Konzerthaus

10:59 CEST

Session 14: Variation, Metagenomics & Assembly Track GermanySaskia Hiltemann

11:00 CEST

Analysing and organising large-scale metabolome annotation studies with Django, ISA and Galaxy GreeceThomas N. Lawson The IRIDA Platform for Microbial Genomics GermanyAaron Petkau

11:20 CEST

Combat-tb Workbench, A Customizable Platform For Variant Discovery And Annotation, Phylogeny Construction And Variant Prioritisation GermanyZiphozakhe Mashologu

11:27 CEST

High throughput HIV next generation sequence analysis in Galaxy GermanyDave Bouvier

11:47 CEST

NanoGalaxy: A Galaxy toolkit and workflows for long-read sequencing GermanyWillem de Koning

11:54 CEST

MITOLINK: An integrated Web-based Workflow System to Evaluate Genotype-Phenotype Correlations in Human Mitochondrial Diseases GermanyAnshu Bhardwaj

12:00 CEST

Lunch Konzerthaus

12:15 CEST

Birds-of-a-Feather (BoFs), with Lunch Konzerthaus Galaxy containers BoF FranceEnis Afgan • Bjorn Gruning • Marius van den Beek • Nuwan Goonasekera • Pablo Moreno

13:20 CEST

15: Training Session Konzerthaus CVMFS and Pulsar GreeceSimon Gladman • Nate Coraor • Gianmauro Cuccuru • Helena Rasche Import, handle, visualize and analyze biodiversity data in Galaxy SpainYvan Le Bras • Simon Bénateau Machine Learning with Galaxy - Predict age from DNA-methylation dataset GermanyAlireza Khanteymoori • Anup Kumar Metabolomics data analysis I FranceRalf Weber • Gildas Le Corguillé • Mélanie Petera • Thomas N. Lawson Proteomic data analysis with Galaxy BelgiumMatthias Fahrner • Maren Stillger • Melanie Föll

14:50 CEST

16: Poster, Demo, and Sponsor Session Konzerthaus

15:50 CEST

17: Training Session Konzerthaus ELIXIR Galaxy AAI: Authentication and Authorisation Infrastructure ItalyKjetil Klepper Genomic assembly and data analysis in Galaxy with Nanopore ONT long read sequencing GreeceWillem de Koning • Saskia Hiltemann • Milad Miladi Metabolomics data analysis II FranceRalf Weber • Thomas N. Lawson • Gildas Le Corguillé • Mélanie Petera

17:29 CEST

Session 18: Closing Plenary GreeceAndrew Lonie

17:30 CEST

Invited Talk: UseGalaxy: Elucidating chromatin biology of mouse cardiomyocytes GreeceStephan Nothjunge

18:00 CEST

Galaxy and Training: 2019 updates from the Galaxy Training Network GreeceBérénice Batut

18:20 CEST

Closing GreeceDave Clements • Bjorn Gruning • Anika Erxleben

19:00 CEST

Birds-of-a-Feather (BoFs), with Your Dinner! Offsite Intergalactic Utilities Commission (IUC) BoF OffsiteBjorn Gruning • Marius van den Beek • John Chilton • Nicola Soranzo • Saskia Hiltemann • Bérénice Batut • Daniel Blankenberg • Helena Rasche The Freiburg City Tour BoF!FILLING Offsite
 
Friday, July 5
 

08:00 CEST

Conference Desk Open Konzerthaus

09:00 CEST

CollaborationFest: Core Konzerthaus
 
Saturday, July 6
 

08:00 CEST

Conference Desk Open Konzerthaus

09:00 CEST

CollaborationFest: Core Konzerthaus